Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score =  145 bits (366), Expect = 2e-39
 Identities = 113/403 (28%), Positives = 187/403 (46%), Gaps = 19/403 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMY--PD 65
           LTD ++K  KP EK Y + D DGL + +  +GS  + ++Y    NG+R  L  G Y    
Sbjct: 2   LTDTKLKNLKPEEKLYKVSDRDGLYVAVLTSGSVSFRYDYR--INGRRETLVIGQYGRDG 59

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPD 125
           ISL +AR+ L++AK+L+  G  P     ++  + K     TF   T  +    ++ V  D
Sbjct: 60  ISLAEAREELIAAKKLLKAGQSPA--AAKRDGIKKIRGAETFAVHTDHYM---KHIVLAD 114

Query: 126 YALDIWRS-LELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNF 184
               +  S +E  I P + +K +  IT   + +L   I  +G   T  +  + ++ V   
Sbjct: 115 STRTMKESVIERDIMPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRH 174

Query: 185 ATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLH 244
           A + G    NP + IK +     K     L P E+      +   +   T +  L+  L 
Sbjct: 175 ANDRGHGLFNPASDIKPSSIAMFKPRDRCLQPEEVGIFFRTLDTVAAMATMKLALKLVLL 234

Query: 245 TMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDF 304
           TM R  E   A W E+++++  W IP++RMK  R H I L  Q   L+  ++  +G  ++
Sbjct: 235 TMVRKNEFINATWKEVDFKKWEWVIPSDRMKGSRAHVIYLPRQAQDLMVGLQMCAGGSEY 294

Query: 305 IFPSDRAPKKPCNSQTANMALKRMGFAGRLVS--------HGLRSLASTTLNEQGFDPDL 356
           + P   +  +P ++   N  +     A +           H +R  AST L+E G+  D 
Sbjct: 295 LLPGRYSVIRPLSNSALNRLITTTVEAAQAAGYNLEHFAVHDMRRTASTLLHEAGYPSDW 354

Query: 357 VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARG 399
           +E ALAH +   VRS YN+ +Y  +R  M+  W++ I+    G
Sbjct: 355 IEKALAH-EQRGVRSVYNKAEYARQRAYMLQQWADMIDSWIAG 396