Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dianthicola ME23

 Score =  236 bits (601), Expect = 1e-66
 Identities = 144/407 (35%), Positives = 212/407 (52%), Gaps = 24/407 (5%)

Query: 6   VKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPD 65
           + L D +I+  KP  K + + D  GL L I P GS+ W   Y    N K + L  G YPD
Sbjct: 1   MSLNDSKIRNLKPSAKPFKVSDSHGLYLLINPGGSRLWYLKYR--INRKESRLGLGTYPD 58

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDV-TP 124
           +SL  AR+     ++L+AQ I+P   R  ++       E +F +V  DW   K N   + 
Sbjct: 59  VSLADARQQRDGIRKLLAQNINPAHQRAAEKVSRSP--EKSFRDVALDWH--KSNRTWSE 114

Query: 125 DYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNF 184
           ++A  +  S+  H+FP I   PV  + A   I+LLK IE KG LE   R  Q L  +M +
Sbjct: 115 NHATRLLASMNNHLFPVIGHLPVTELKARHFIDLLKGIEKKGLLEVAARTRQHLCNIMRY 174

Query: 185 ATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKR-TTRCLLEWQL 243
           A +  LI+ NP   +      P K +  AL    LPEL+++I +    R  TR  +   L
Sbjct: 175 AVHQELIEHNPAANLDGIIAPPVKRHYPALQLERLPELLASIEDYKQGRELTRLAVSLTL 234

Query: 244 HTMTRPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLAL 291
           H   R +E   ARW EI++   +WTIPA R             K R  H +PL+ Q +A+
Sbjct: 235 HLFIRSSELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQAIAI 294

Query: 292 LEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGF--AGRLVSHGLRSLASTTLNE 349
           L  ++ ISGH+  IFP D  P KP    T N AL+ MG+     +  HG R++A + L E
Sbjct: 295 LRQIQEISGHQVLIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALME 354

Query: 350 QG-FDPDLVESALAHVDDNQVRSAY-NRTDYLERRKPMMCWWSEHIE 394
            G +  D VE  ++H++ N VR+AY ++ +YL+ R+ MM WWS++++
Sbjct: 355 SGLWSQDAVERQMSHLERNSVRAAYIHKAEYLDARQAMMQWWSDYLD 401