Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  243 bits (619), Expect = 1e-68
 Identities = 144/405 (35%), Positives = 220/405 (54%), Gaps = 25/405 (6%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LTD  I+ +KP +K Y L D  GL L IKPNGSK W   Y     GK   L+FG YP +S
Sbjct: 3   LTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYR--FGGKEKKLAFGAYPTVS 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA--IKQNDVTPD 125
           L  ARK    A+ +++ G DP   ++  +Q  K  + +TFE + + W A  I+ ++    
Sbjct: 61  LASARKLREEARTILSAGDDPGVKKQHDKQAKK--NGNTFEAIARQWVAANIRWSEA--- 115

Query: 126 YALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFA 185
           +A  + RSLELH+FP I +  V  +    ++  L+  E KG LET  R+ QR   +M +A
Sbjct: 116 HAAKVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYA 175

Query: 186 TNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHT 245
              GLI +NP   +  A   P K +  AL    LPEL+  I   S +  TR  ++  L  
Sbjct: 176 VQEGLIASNPANDLCGAITPPPKNHYPALPLERLPELLERIEGYSGRLLTRLAVQLNLLI 235

Query: 246 MTRPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLALLE 293
             R +E   ARW EI+ +  +WT+PA+R             K +  H +PL++Q + +L+
Sbjct: 236 FIRSSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLK 295

Query: 294 VMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGF--AGRLVSHGLRSLASTTLNEQG 351
            +K +SG+ D +FP D   +KP +  T N AL+ MG+     +  HG R++A + L E G
Sbjct: 296 QLKLLSGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESG 355

Query: 352 -FDPDLVESALAHVDDNQVRSAY-NRTDYLERRKPMMCWWSEHIE 394
            +  D VE  ++H + N VR+AY ++ ++L+ R  MM WWS++++
Sbjct: 356 RWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLD 400