Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  258 bits (658), Expect = 3e-73
 Identities = 146/404 (36%), Positives = 226/404 (55%), Gaps = 20/404 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LTD   + +KPREK Y L D  GL L + PNGSK+W   Y    +GK + ++FG YP IS
Sbjct: 3   LTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYR--FDGKESRIAFGAYPLIS 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-IKQNDVTPDY 126
           L +AR+     + L+++GI P + R+ +++  ++   +TFE V +DW   I QN  +  +
Sbjct: 61  LAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDAL-NTFEKVARDWHRNISQNRWSQTH 119

Query: 127 ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT 186
           A  +WR +E +I P I  + +  +   +++E LK +E  G L+   RL QR+ ++M +A 
Sbjct: 120 AGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRITDIMRYAV 179

Query: 187 NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM 246
              LI+ NP   +  A   PK  +  AL   +LP+ ++ I     +  TR  L+  L   
Sbjct: 180 QNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIERYKGRALTRLALKLTLCVF 239

Query: 247 TRPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLALLEV 294
            R +E   ARW EI+++  +WTIP ER             K R EH +PL+ Q LALLE 
Sbjct: 240 IRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEE 299

Query: 295 MKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGF--AGRLVSHGLRSLASTTLNEQG- 351
           +K ISG  + IFP D  P KP +  T N AL+ MG+     +  HG R++A + L E G 
Sbjct: 300 IKAISGVHELIFPGDHRPTKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESGQ 359

Query: 352 FDPDLVESALAHVDDNQVRSAY-NRTDYLERRKPMMCWWSEHIE 394
           +  D VE  ++H + N VR+AY ++ ++LE RK M+ WW+++++
Sbjct: 360 WSRDAVERQMSHQERNGVRAAYIHKAEHLEERKLMLQWWADYLD 403