Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dadantii 3937

 Score =  255 bits (652), Expect = 2e-72
 Identities = 142/410 (34%), Positives = 223/410 (54%), Gaps = 21/410 (5%)

Query: 6   VKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPD 65
           +KL  ++++ +KP+EK Y + DG GL L I P GSK W   Y RP + K   L+FG++P 
Sbjct: 1   MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT 60

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPD 125
           ++L  AR     AK+L+ QGIDP+ ++K  Q   +    +TFE + + W A   N    D
Sbjct: 61  VTLADARAKRDEAKKLLVQGIDPKAEQKEAQA--ETAGAYTFETIARQWHA--SNKRWGD 116

Query: 126 Y-ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNF 184
           Y    + R LEL+IFPHI    ++ +    ++  +K ++A G  +  +RL QR+  +M +
Sbjct: 117 YHRARVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRY 176

Query: 185 ATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLH 244
           A     I +NP + +  A    K  +  AL P  L E +S +A    ++ TR  +E  L 
Sbjct: 177 AVQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLL 236

Query: 245 TMTRPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLALL 292
           T  R +E   A+W E ++++  W +PA+R            MK + EH +PL+ Q +ALL
Sbjct: 237 TFVRSSELRFAQWHEFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALL 296

Query: 293 EVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGF--AGRLVSHGLRSLASTTLNEQ 350
           E +K ISG    +FP D  P+K  +  T N AL+ MG+     +  HG R++A   L E 
Sbjct: 297 EQLKAISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGES 356

Query: 351 G-FDPDLVESALAHVDDNQVRSAYNRT-DYLERRKPMMCWWSEHIEEAAR 398
           G +  D +E  L+H + N VR+AY  T +YL+ R+ M+ WW++++E   R
Sbjct: 357 GLWSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLEVLKR 406