Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., putative integrase from Escherichia coli BL21

 Score =  204 bits (518), Expect = 5e-57
 Identities = 121/380 (31%), Positives = 201/380 (52%), Gaps = 21/380 (5%)

Query: 31  LRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKELIAQGIDPQD 90
           + L + PNGSK W   Y     GK+  L+ G+YP+I+L  AR      ++L+A G+DP D
Sbjct: 1   MHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD 58

Query: 91  DRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAI 150
            +K  +   ++    TF+ V  +W    +   + D+A  + +SLE ++F  + ++ +  +
Sbjct: 59  KKKNDKV--EQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLKSLEDNLFAALGERNIAEL 115

Query: 151 TAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKEN 210
              +++  +K +E  G LE   RL QR   +M +A   GLI  NP   +  A     +++
Sbjct: 116 KTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQH 175

Query: 211 MAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIP 270
             AL    +PEL++ I + + +  TR  +E  L    R +E   ARW EI++E  +WTIP
Sbjct: 176 RPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIP 235

Query: 271 AER------------MKKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNS 318
            ER             K R  H +PL+ Q LA+L+ +K   G  D IF  D    KP + 
Sbjct: 236 PEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSE 295

Query: 319 QTANMALKRMGFAGR--LVSHGLRSLASTTLNEQG-FDPDLVESALAHVDDNQVRSAY-N 374
            T N AL+ MG+  +  +  HG R++A ++L E G +  D VE  ++H+  N VR+AY +
Sbjct: 296 NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIH 355

Query: 375 RTDYLERRKPMMCWWSEHIE 394
           + ++LE R+ M+ WW++ ++
Sbjct: 356 KAEHLEERRLMLQWWADFLD 375