Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Int from Escherichia coli BL21

 Score =  275 bits (703), Expect = 2e-78
 Identities = 141/387 (36%), Positives = 225/387 (58%), Gaps = 2/387 (0%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LTD ++K +KP++K Y L DG G+ L I  NGSK W   Y     GK   LS G+YPD++
Sbjct: 3   LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFA--GKEKMLSIGVYPDVT 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L  AR+    A++L+A G DP + +K ++   +   ++TFE + ++W   K +  +  Y 
Sbjct: 61  LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR 120

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
            +I  + E  IFP+I  +P+  I   E++E L+ +E +G+LE ++++ QR  EV  +A  
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            G    NP   + +A   PKK +   LT  ELP  ++ +A  +    T+   +  + T  
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240

Query: 248 RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP 307
           R  E   ARW++I++E K+W IPAE MK +R H +PL+EQ++ L + ++PIS H   +F 
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI 300

Query: 308 SDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDN 367
               P+KP + ++ N  ++ +G+ GRL  HG R   ST L+EQGF+   +E  LAHVD N
Sbjct: 301 GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360

Query: 368 QVRSAYNRTDYLERRKPMMCWWSEHIE 394
            +R  YN   YL+ R+ MM W++++I+
Sbjct: 361 SIRGTYNHALYLDGRREMMQWYADYID 387