Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Fels-2 prophage protein from Escherichia coli BL21

 Score =  364 bits (935), Expect = e-105
 Identities = 186/399 (46%), Positives = 256/399 (64%), Gaps = 6/399 (1%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN 57
           MAK   KLTD EIK++KP EKE NLFDGDGL LRI P    G K W F Y  P   KR  
Sbjct: 1   MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK 60

Query: 58  LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWF-- 115
           +S G YP ++L +AR        L+  GIDPQ    ++    K+  EHTF+ V K W   
Sbjct: 61  VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE 120

Query: 116 AIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT 175
            +K + ++ D+A DIWRSLE +IF  + D P+K I    + + L+PIE +G LET++R+ 
Sbjct: 121 KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII 180

Query: 176 QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT 235
            RLNE+  +A    LI+ NP   +   F KPKK+NM AL P+ELP  + A+ NASI+  T
Sbjct: 181 SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET 240

Query: 236 RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM 295
           R L+EWQL T  RP EA   RW +I+ E  +W IPAE MK ++ H++PL+++ L +L++M
Sbjct: 241 RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM 300

Query: 296 KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP 354
           K ISGHR+++FPS +AP    + QTAN A+ RMGF G LV+HG+RS+A T   E G F  
Sbjct: 301 KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT 360

Query: 355 DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI 393
           D++E+ALAH   +++ +AYNR +YL  R  +M WWS+++
Sbjct: 361 DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV 399