Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score =  145 bits (367), Expect = 2e-39
 Identities = 105/372 (28%), Positives = 173/372 (46%), Gaps = 18/372 (4%)

Query: 27  DGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKELIAQGI 86
           DG GL L +  +G+K+W+F Y R  + +   +  G    ++L +AR+    A+  +  G+
Sbjct: 24  DGGGLYLVVDKSGAKRWVFLYRR--SDRLREMGLGGVHSVTLAKARELAQDARTKLQAGV 81

Query: 87  DPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYALDIWRSLELHIFPHISDKP 146
           DP   +     +       TF +   D+ A  +        +  W          +  K 
Sbjct: 82  DPIQAKHTAPPLVP-----TFGDEADDFIAAMKPQFRNAKHVAQWEMTLREYAAPLRQKL 136

Query: 147 VKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFKK- 205
           +  +T  +++ +LKPI    S ET  R+  R+  V++ A   GL         +    K 
Sbjct: 137 ITEVTTADVLGVLKPIWLTKS-ETASRVRGRIERVLDAAKAKGLRTGENPALWRGHLDKL 195

Query: 206 -PKKENMAALTPAELPELMSAIANASIKR---TTRCLLEWQLHTMTRPAEASGARWDEIN 261
            PK+  +A      +P    A     +++        LE+ + T  R  E  GA+W EI+
Sbjct: 196 LPKRRKLARGHHKAMPYADVAAFIIELRKREAVAATALEFTILTAARSGETLGAKWHEID 255

Query: 262 WEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI-SGHRDFIFPSDRAPKKPCNSQT 320
           W++K+WT+PAERMK  REHR+PL+ + + +L+ +    S    F+FP  + P KP +   
Sbjct: 256 WKDKIWTVPAERMKAAREHRVPLSSRTITILKKLAEFGSDENSFVFPGQK-PGKPLSVMA 314

Query: 321 ANMALKRMGFAGRLVSHGLRSLASTTLNE-QGFDPDLVESALAHVDDNQVRSAYNRTDYL 379
            +M L+RM     +  HG RS       E   F  D+ E+ALAHV  ++   AY R D L
Sbjct: 315 MDMVLRRMEV--DVTVHGFRSSFRDWCGEVSNFPRDVAEAALAHVVGDKTERAYRRGDAL 372

Query: 380 ERRKPMMCWWSE 391
           E+R+ +M  W +
Sbjct: 373 EKRRKLMAAWEK 384