Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  181 bits (460), Expect = 3e-50
 Identities = 119/418 (28%), Positives = 213/418 (50%), Gaps = 34/418 (8%)

Query: 1   MAKNTVKLTDKEIKA-------SKPR--EKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPT 51
           M K  + LTD +IKA       + P   +K+  L DG GL L I+ NG+  W F+Y RP 
Sbjct: 1   MPKQVISLTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPV 60

Query: 52  NGKRANLSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVT 111
           + KR  ++ G YP +SL +AR+     + L+A+G DPQ +++  ++  +   + TF++V 
Sbjct: 61  SKKRNTMTVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVA 120

Query: 112 KDW--------FAIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIE 163
           + +          +K+ND            +   ++  + + P+  IT  ++ ++++  E
Sbjct: 121 ELYKSKQRLAEATVKRND-----------GIFEKLYRDVGNMPISDITPRDLAKVIEKDE 169

Query: 164 AKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALT-PAELPEL 222
            KG +E+  R+  + ++V  FA   GL + +    +     + +K + +ALT P +   L
Sbjct: 170 NKGHIESAMRIRSKASQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACL 229

Query: 223 MSAIANASIKRT-TRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAER--MKKRRE 279
           +  I +   +    +  L+       R  E   A+W +IN+E   W+    +   K   +
Sbjct: 230 LFDIDHYESQLVHVKLALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLD 289

Query: 280 HRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGR-LVSHG 338
           H +PL+ Q +A+L+     + + DF+FPS     +P +  + NMAL+RMG+    +  HG
Sbjct: 290 HIVPLSTQAIAILKEALNFTNNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHG 349

Query: 339 LRSLASTTLNE-QGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE 395
            R++A T L+E   F  D++E  LAH   +    AYNRT +L++R+ MM  WS++ +E
Sbjct: 350 FRAIARTLLDEVLEFPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDE 407