Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  144 bits (363), Expect = 5e-39
 Identities = 117/401 (29%), Positives = 197/401 (49%), Gaps = 48/401 (11%)

Query: 29  DGLRLRIKPNGSKQWIFNYYRPTNGKRAN-----------LSFGMYPDISLLQARKSLLS 77
           DGL L ++ N S+ WI    R   GKR +           +  G YP++SL +AR     
Sbjct: 28  DGLCLNVEGN-SRVWIL---RAVVGKRLDKDGKLKPHRRDIGIGPYPEVSLAEARAKATE 83

Query: 78  AKELIAQGIDPQDDRKRQQQVHK----EIHEHTFENVTKDWFAIKQNDVTPDYALDIWRS 133
            +  I  GIDP     +Q+Q+ K    ++ + TF    K   A K  ++  +  +  W S
Sbjct: 84  LRLQIRSGIDPI--AHKQEQLEKLYVQKLRDKTFMECAKVVIANKTRELKNEKHIGQWTS 141

Query: 134 -LELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQ 192
            LE +I+P + D  +  IT  +I E+L+PI  K + ET KR+  R+  + ++A   G  +
Sbjct: 142 TLETYIYPTLGDISIGTITKVDIAEVLRPIWIKKN-ETAKRIRGRIETIFDYAKAMGYFE 200

Query: 193 A-NPLT---GIKAAFKKPKKENMA--ALTPAELPELMSAIANASIKRTTRCLLEWQLHTM 246
             NP      ++  F   K+E+    +L   ++   +  +     K  +   LE+ + T 
Sbjct: 201 GDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGFIQHLRQK--KGISPKALEFAILTA 258

Query: 247 TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF 306
            R  E  GA+W EI+++ KVW IP ERMK  +EHR+PL+++ + LL+ ++  +  +DFIF
Sbjct: 259 CRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVPLSQEAVNLLKSIQEYTQPQDFIF 318

Query: 307 PSDRAPKKPCNSQTANMALKRM----------GFAGR-----LVSHGLRS-LASTTLNEQ 350
           P+ R      +  +  + +KRM          G+        + +HG RS     + ++ 
Sbjct: 319 PAPRNGAM-LSDMSLTILIKRMHEQKLKENGLGYIDPKQNRVITTHGFRSTFRDWSADKT 377

Query: 351 GFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSE 391
            +  ++ E  LAH   ++V +AY R  YLE+RK +M  W+E
Sbjct: 378 DYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMADWAE 418