Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score =  149 bits (376), Expect = 2e-40
 Identities = 108/397 (27%), Positives = 187/397 (47%), Gaps = 23/397 (5%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           L D +IK  K ++K Y + D  GL L ++  GSK W + Y      K   L+ G YP+IS
Sbjct: 2   LNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKM--LTIGPYPEIS 59

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L  AR      + ++A+ +DP  ++K+      +  +HTF++++ ++    ++  + ++ 
Sbjct: 60  LSYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWY 119

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELL--------KPIEAKGSLETVKRLTQRLN 179
            +  R  +  I P I +KP+K + + +I  +L        K     G ++ +  + Q   
Sbjct: 120 ENRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIY-VRQICA 178

Query: 180 EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL 239
           EVM +A     I  +P   +++  ++P   +   L   +   +++ I        T+  L
Sbjct: 179 EVMQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQNAL 238

Query: 240 EWQLHTMTRPAEASGARWDEINWEEKVWTIPA----------ERMKKRREHRIPLTEQML 289
              L++M R  E   A+   +N ++   TIP             MKK R H +PL+ QML
Sbjct: 239 RTALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQML 298

Query: 290 ALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE 349
            +++    +     ++FP D          T N AL  MG  G +  H  R+ AST LNE
Sbjct: 299 EIIKEQLQLYPDSIYLFPGDDGISM-LGKNTLNEALVNMGL-GHITMHDFRATASTYLNE 356

Query: 350 QGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMM 386
           Q +  D +E  LAHVD +  R++YN   +L+ R+ MM
Sbjct: 357 QNYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMM 393