Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  231 bits (590), Expect = 6e-65
 Identities = 168/546 (30%), Positives = 293/546 (53%), Gaps = 42/546 (7%)

Query: 112 NDPNFKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTS--APIYNKNDLTG 169
           ND N  + TG   R   +YL +K+       +P    +   +++  S   PI       G
Sbjct: 174 NDQNI-LSTGV--RASEYYLCSKENKKACAIDPAPYKVGNAMVMLASFIEPIMIDGAFQG 230

Query: 170 VIFFDIPLDDVQELIKS-----YNPFDAGTIFIVDNSGKIIFGNKNDIS-GKNLFGDFDS 223
           ++  D+ ++ +Q+++ S     YN   AG + ++ ++G+++   K+    G+      DS
Sbjct: 231 IVGADLSVNFIQDMLTSADQKLYN--GAGEMALISSNGRLVAYTKDASKLGEKASDLLDS 288

Query: 224 FPLS-VSESKTKDKNGVNYDV-------------LIKMSDFGGWNLVS-------IIDHD 262
             L+ +++ K  +   V YD+              I  +D   W L+        + D  
Sbjct: 289 NELTNLNQLKAGE---VRYDIDKEHGHIELFLPFTIGQAD-ARWTLMLQLPLSAVMADSQ 344

Query: 263 KARSDIITLRNNSIF----TAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADL 318
           K +SD+   R   IF      +++A +   ++      + +PL Q+   + +I+ G  DL
Sbjct: 345 KLQSDLEAQRKTDIFGMTIAGLLIAGIGLLVIWLVGHGIARPLKQMVAMLNDIAQGEGDL 404

Query: 319 TVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVAD 378
           T R+ +    E   I N FN F+  LQ ++++V  + +K++  +  T ++    N  V  
Sbjct: 405 TRRLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHK 464

Query: 379 QYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEK 438
           Q  E+D +A++++EM AT+  +A+  ++A++  S  +   ++G+  V   + S+G L E+
Sbjct: 465 QMVEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEE 524

Query: 439 LDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEV 498
           + K  SV+Q L + ++NI+ IL AI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 525 IGKAVSVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 584

Query: 499 RSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSV 558
           R+LA KTQ++T+ I ++I  LQ+ +   V VM++S +   E++  +A + + L+ I+Q+V
Sbjct: 585 RNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAV 644

Query: 559 IQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQD 618
             I D+  Q+A+AA EQS V+E+IN N I+I   A+ ++   ++ S  +     L   Q 
Sbjct: 645 SVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQR 704

Query: 619 DLISKF 624
            LI++F
Sbjct: 705 RLINQF 710