Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  211 bits (537), Expect = 9e-59
 Identities = 161/611 (26%), Positives = 290/611 (47%), Gaps = 36/611 (5%)

Query: 48  SLEDKINLSIESKVDVSKSVIDIY----ENLLEGESPLSKFKDVDVNHLSNVFQLFGYAD 103
           +L +++N S+++  + +  V+ I+     N L+G+   S+F D      +   +   Y  
Sbjct: 102 ALREELNQSLKTTFERNSKVLGIWLSFEPNGLDGKD--SEFVDDKARVSNEKGRFSSYWS 159

Query: 104 ERTGE-----IITNDPNFKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEK--LMVT 156
              GE     ++ +D     P         WY   +      L +PY D +  K  LM T
Sbjct: 160 RAGGEGLNTIMVEDDLTKTTPNLSGTPYNIWYTCPRDTRKVCLLDPYADEVAGKQMLMTT 219

Query: 157 TSAPIYNKNDLTGVIFFDIPLDDVQELIKSYNPF---DAGTIFIVDNSGKIIFGN-KNDI 212
            S P+    ++ GV+  DI L+ +Q +  +        A  + I+ ++G I   + + +I
Sbjct: 220 ISLPLMVDGNVIGVVGIDIALNTLQAVTDAAQKELFNGAAHLDILSSTGLIAASSGQPEI 279

Query: 213 SGKNLFGDFDSFPLSVSESKTKDKNGVN-YDVLIK-------MSDFGGWNLVSIIDHDKA 264
            GK L     +    + +    D   +   D  I+       ++D   W +V  +  +  
Sbjct: 280 VGKTLMDTVGAEGKEIVQLLASDSPMIREQDHTIRAVYPVKPIADAKSWGVVVTLPRNVM 339

Query: 265 RSDIITLRN-----------NSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISS 313
            +D + L++            ++      A +   ++  T   + +P++ +   + +I+S
Sbjct: 340 LADTLKLQDVLDKAQAAGTLKALLVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIAS 399

Query: 314 GSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCN 373
           G  DLT R+  +   E  ++ N FN F+  LQ  ++++K +  +      ++  +    +
Sbjct: 400 GDGDLTQRLAYAKKDELGELANWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTS 459

Query: 374 NSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVG 433
             +  Q+RE+D +A++ NEM AT++ +A   S A+      +    EG+  +   T  + 
Sbjct: 460 EGMQVQFREIDQVATASNEMSATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDIT 519

Query: 434 NLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAV 493
           +L E++ K    ++ L   ++ I  +L+ I  IA+QTNLLALNAAIEAARAGE+GRGFAV
Sbjct: 520 SLAEEVSKAVGEVEALAVNSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAV 579

Query: 494 VADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDN 553
           VADEVR+LA +TQ+S + I  +I  +Q  +   V  M  S + A         + Q L  
Sbjct: 580 VADEVRNLAKRTQDSVEEIRLVIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGK 639

Query: 554 ISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKAL 613
           IS +V  I D+  Q+A+AA +QS V+EE+N N  +I+   +TL+    + +  +    AL
Sbjct: 640 ISDAVTVISDMNLQIASAAEQQSAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNAL 699

Query: 614 IGHQDDLISKF 624
              Q  L+ +F
Sbjct: 700 ASQQMKLMDQF 710