Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  268 bits (685), Expect = 5e-76
 Identities = 191/635 (30%), Positives = 327/635 (51%), Gaps = 34/635 (5%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRT-IKDTISETLDSLEDKINLSIES 59
           ++FS K+L+  + I+I   ++ T +     N+YL R  I+D ++  L  + D    +I++
Sbjct: 5   LRFSHKILLAASLIVIAAFALFTLY-----NDYLQRNAIRDDLNNYLQEMGDVTASNIQT 59

Query: 60  KVDVSKSVID-IYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKV 118
            +    ++++   +N+     P +    ++   L++ F      D +     T  P+ K+
Sbjct: 60  WLGGRIALVENAAQNIAINPEPSAVASLLEQKTLTSSFMATYVGDSKGA--FTIRPDTKM 117

Query: 119 PTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLD 178
           P GFDPR R WY  A+  N  +L+EPY+D  T KL+++ + P        GV+  D+ L 
Sbjct: 118 PDGFDPRVRPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQSIGVVGGDLSLQ 177

Query: 179 DVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSV-------SES 231
            + + I + N    G  F+V   GK++     ++  K L    D +P +        SE 
Sbjct: 178 TLVDNIGALNFGGMGYAFLVSADGKVLVHPDKNLVMKTLA---DVYPKNTPKISADFSEV 234

Query: 232 KTKDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILL 291
           +   K+ +   + IK      W+L   +D DK+ + +   R +++    I   +  A+L 
Sbjct: 235 EANGKDNIVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLG 294

Query: 292 FTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEV 351
             +R++++PLH +T AM +I+ G  DLT R+      EF  + N+FN FV  + + + EV
Sbjct: 295 MLIRILMQPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREV 354

Query: 352 KMNSEKINCITTETQELVEVCNNSVA---DQYRELDMLASSMNEMVATSNQIAQITSEAS 408
              +E +N +      +V   N+S+    +Q    + +A+++N++ A + +IA+  ++AS
Sbjct: 355 SSATEHVNEVALR---VVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAAQAS 411

Query: 409 EITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIAD 468
              S       +G   V    +++  L   +  + S I+ LN +T NI  IL+ I  I+ 
Sbjct: 412 HQASDARHLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQ 471

Query: 469 QTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVH 528
           QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQES + +  +I  LQ  +  SV 
Sbjct: 472 QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVS 531

Query: 529 VMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINS---- 584
            M ES   + E++ I+  + + L++++Q + +I  +   VATA  EQ+ V E IN     
Sbjct: 532 TMGESQRHSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITE 591

Query: 585 ----NSISIKDKADTLSSLGNKISQQAYSQKALIG 615
               N   +++   TL +  + + QQA   K L+G
Sbjct: 592 INTLNQEGVENLQSTLRACAD-LEQQAARLKQLVG 625