Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  213 bits (543), Expect = 2e-59
 Identities = 164/649 (25%), Positives = 298/649 (45%), Gaps = 31/649 (4%)

Query: 1   MKFSIKLLMIFTSI-IITISSILTYFQMHGTNEYLD----------RTIKDTISETLDSL 49
           MK   KL++ F S+  I +S +     M+   E +D          R I   I +  D  
Sbjct: 1   MKIKNKLVLAFVSVAFIPVSLVAVISVMNARTEAVDQFIDGSTREIRQIDGNIRQFFDGT 60

Query: 50  EDKINLSIESKVDVSKSVIDIYENL--------LEGESPLSKFKDVDVNHLSNVFQLFGY 101
              ++      V  S + +  Y+           E ++ + +F      H +      G 
Sbjct: 61  LQNVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVIERFARYGATHPAAAILSIGL 120

Query: 102 ADERTGEIITNDPNFKVPTGFDPRTRSWYLNAKKLNTFSLSEP--YVDLITEKLMVTTSA 159
            D    +   +DP       +DPRTR WY  A      ++  P  Y D   +  +V T+ 
Sbjct: 121 EDGTYAKW-PDDPQL---AKYDPRTRPWYKAAMASPGKTVRTPAYYYDK-DDVALVGTAR 175

Query: 160 PIYNKNDLTGVIFFDIPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISG----K 215
            +       GV    + L ++ EL+KS    ++G + +V++ G ++   +N        K
Sbjct: 176 ALLENGKAKGVFVVSVSLKNLTELVKSIKLGESGYVMLVED-GVVLVDPRNAAHNFKPLK 234

Query: 216 NLFGDFDSFPLSVSESKTKDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNS 275
            L   +     +   S     +GV+Y   +  S   GW  + +I+H +  ++   +   +
Sbjct: 235 GLGAAYAQLAETPQGSTDVVIDGVHYMANVWTSPGLGWRYIGLIEHREVMAEATRMTYLT 294

Query: 276 IFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIIN 335
                +L  +F  I     ++++KP+ Q++  + +I+ G  DL   +      E +++  
Sbjct: 295 ALIVGVLVLIFGLIAAAFSKVIVKPIGQVSTGLQSIAQGEGDLRHELQVQGKDETAELAG 354

Query: 336 SFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVA 395
            FN F+  ++ ++  +   S  +   +    E+    N +   Q   +++++++ NEMVA
Sbjct: 355 WFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFNEMVA 414

Query: 396 TSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQN 455
           T+N++A+  S A+E     + +V EG   +   T++V  L  +L ++   + +L   +++
Sbjct: 415 TANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEAGSRS 474

Query: 456 IDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSI 515
           I+ IL  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA +T +ST  I  +
Sbjct: 475 INQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEIEQL 534

Query: 516 IHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQ 575
           +  L+  +      M    +++  +++    ++   + I  SV +I D   Q++ AA EQ
Sbjct: 535 LGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAAEEQ 594

Query: 576 SHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
             V+EEIN +   I D+A  + SL N     +     L    + L+ +F
Sbjct: 595 HSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRF 643