Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  176 bits (447), Expect = 2e-48
 Identities = 141/520 (27%), Positives = 235/520 (45%), Gaps = 27/520 (5%)

Query: 127 RSWYLN--AKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELI 184
           +SWY    A      + +  Y D  +++     +  I       GV   D+ L    +L+
Sbjct: 147 QSWYKGGLASPRGQCAWAAAYKDDASQEPRTNCAMAIQRDGVPYGVATIDVTLGFFNDLV 206

Query: 185 KSYNPFDAGTIFIVDNSGKIIFG-----------NKNDISGKNLFGDFDSFPLSVSESKT 233
            S      G + IV+  GKII             N ++++G + F    S  L+  +   
Sbjct: 207 ASKEKDIGGQMLIVEGDGKIISNSTRISSPVVLKNISELTGTSAFAAQVSKALAQRDQAL 266

Query: 234 K----DKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAI 289
           +    D  GV     ++      W L + +      + +IT + + +   + L  +   +
Sbjct: 267 QRSEFDNQGVASTFYMRPIAGTPWFLATALP-----TALITAQRDDVLGTLALLQIPMVL 321

Query: 290 LL-----FTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNL 344
           LL     + +R +++ +  L   +  +S+G ADLT RI    + E   I +S N F+  L
Sbjct: 322 LLVLLAVYAIRQLVQRMKSLKTNIDALSTGDADLTRRITIRAEDELGAIGHSVNRFIVYL 381

Query: 345 QSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQIT 404
           Q+++ EV   +  ++    + Q      N  +     E D   +++ EM +T++ +AQ  
Sbjct: 382 QNMIGEVTQATGAMSSSLEQLQRTSAHTNQILVRHASETDQTVTAITEMSSTADTVAQNA 441

Query: 405 SEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAIN 464
           +E +  T + N   +     V   + SV  L+ ++      ++++ +    I   L  I 
Sbjct: 442 AETAAFTQRANEHADRSRVVVGEASNSVSALIGEVSSATHSVENMRQDAARITETLGVIG 501

Query: 465 DIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSL 524
            IA QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  I  ++  L     
Sbjct: 502 AIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTSQINEMLTRLTAGVS 561

Query: 525 LSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINS 584
            SV  M+ +          +A     LD ++ SV  I +++ Q+ATAA +QS V+EEIN 
Sbjct: 562 SSVAAMENTQASCQSAADATARVNTGLDEMAGSVSHINNLSTQIATAAEQQSAVTEEINR 621

Query: 585 NSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
           + + I+   + L   G+       S     G    L+ +F
Sbjct: 622 SMVQIRQMVEELVQSGHATETNTQSLLDANGRVIALMGRF 661