Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  251 bits (641), Expect = 7e-71
 Identities = 191/636 (30%), Positives = 337/636 (52%), Gaps = 39/636 (6%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDS-LEDKINLSIES 59
           +KFS K+L+  + +++   ++ T +     N+YL R+   TI + L+S ++    L+  S
Sbjct: 3   LKFSHKILLAASGVVVLAFALFTLY-----NDYLQRS---TIKQNLESSIQQSGELTASS 54

Query: 60  KVDVSKSVIDIYENLLEGESPLSKFKD----VDVNHLSNVFQLFGYADERTGEIITNDPN 115
             +     I + E+L +  +      D    VD    ++ FQ F Y  +  G + T  P+
Sbjct: 55  VQNWLSGRILVLESLTQNVAHQGSGADLPGLVDQPAFTSNFQ-FTYVGQTNG-VFTQRPD 112

Query: 116 FKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDI 175
            K+P G+DPR R WY  A   +   L+ PY+  +  ++ VT + P+    +L GV+  D+
Sbjct: 113 AKMPDGYDPRQRPWYKQAVAADKPMLTPPYMAAVGGQI-VTIAMPVKKNGELLGVVGGDL 171

Query: 176 PLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKD 235
            L  + ++I S +    G  F+V + G++I   + D   KNL   +    + + E  ++D
Sbjct: 172 SLQTLVKIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQVRI-EKVSQD 230

Query: 236 KNGVNYDVLIKMSDFGG-----WNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAIL 290
                 D ++  +   G     W +   ID DKA + +   R +++  A+++A V  A+L
Sbjct: 231 VVLNGQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALI-AMLIAVVAIAVL 289

Query: 291 L-FTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVS 349
           L   ++++L+PL  +  AM +I+ G  DLT R+  ++  EF ++ ++FN FV  + + +S
Sbjct: 290 LSLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASIS 349

Query: 350 EVKMNSEKINCITTETQELVEVCNNSVA---DQYRELDMLASSMNEMVATSNQIAQITSE 406
           EV   + +++ ++   Q ++   N S+    +Q    + +A+++NE+ A + +IA+  ++
Sbjct: 350 EVSSATRQVHDLS---QRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAAD 406

Query: 407 ASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDI 466
           AS+  S  + Q ++G   V     ++  L +K+  + + I+ LN  T NI  IL  I  I
Sbjct: 407 ASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGI 466

Query: 467 ADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLS 526
           + QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQES + I  +I  LQ  S  +
Sbjct: 467 SQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREA 526

Query: 527 VHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN--- 583
           V  M+ S   + E++ ++  + + L +++Q +++I  +   VA A  EQ+ V E +N   
Sbjct: 527 VTTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDI 586

Query: 584 -----SNSISIKDKADTLSSLGNKISQQAYSQKALI 614
                 N   + +  +TL    + +SQQA   K L+
Sbjct: 587 NQINLLNQQGVANLNETLKDC-DALSQQANRLKQLV 621