Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  331 bits (848), Expect = 7e-95
 Identities = 201/627 (32%), Positives = 335/627 (53%), Gaps = 8/627 (1%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESK 60
           MKFS K++   + +++   ++L+  Q     +     I+  +S+++D + D ++ +    
Sbjct: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRD----EIRSMVSDSVDEIVDGVSKTTAEV 56

Query: 61  VDVSKSVIDIYENLLEGESPLSKFKDVDVNHL-SNVFQLFGYADERTGEIITNDPNFKVP 119
           ++  KS+     +L+E        + +    L  N F L G+  E+ G  I NDP++   
Sbjct: 57  INGRKSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPG 116

Query: 120 TGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNK--NDLTGVIFFDIPL 177
             +DPR R WY +AK      ++ PY D  + +++V+ + P+ +       G IF+D+ L
Sbjct: 117 PTWDPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSL 176

Query: 178 DDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKN 237
            ++ EL+     FDAG +FIV   G  I   K + +GK +        ++V   +    N
Sbjct: 177 AELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVDTHQVII-N 235

Query: 238 GVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLM 297
           G  Y V     +   W +  +ID + A + +  LR +++   VI   +   +LLF +R++
Sbjct: 236 GKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVL 295

Query: 298 LKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEK 357
           +KPL  L DA+ N++SG  DLT R+  +TD+EF+K+   FN F   LQ  + + K    +
Sbjct: 296 MKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAE 355

Query: 358 INCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQ 417
           I   +  T   ++    ++  Q  EL+ LA++M+EM  TS+ +A     A+      +  
Sbjct: 356 ILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDA 415

Query: 418 VNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNA 477
              G   V+  T+++  L   +D     ++ L   T NI+ +LK INDIADQTNLLALNA
Sbjct: 416 AAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNA 475

Query: 478 AIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIA 537
           AIEAARAGE+GRGFAVVADEVR+LA +TQ+ST  I ++I  LQ  +      M  S + A
Sbjct: 476 AIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTA 535

Query: 538 SETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLS 597
           +  +  +  + + L+ I  ++ QI D+  Q+A+AA EQS V+EEIN+N++ IKD +D ++
Sbjct: 536 ASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVA 595

Query: 598 SLGNKISQQAYSQKALIGHQDDLISKF 624
              ++ +     Q   I  QD +++KF
Sbjct: 596 ESADEANMSMQIQTENIREQDAILNKF 622