Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (505), Expect = 4e-55
 Identities = 161/625 (25%), Positives = 290/625 (46%), Gaps = 65/625 (10%)

Query: 1   MKFSIKLLMIFTSIIITISSILTYFQM-HGTNEYLDRTIKDTISETLDSLEDKINLSIES 59
           + F  K++ +  +II +++ I +YF + +  ++Y+ +     I+  +D ++ K+   + S
Sbjct: 4   LSFKNKIIALIIAII-SLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENELNS 62

Query: 60  KVDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVP 119
           K+ +++S+   +  +  GE+  S       N +  +    GYA + TG +   D    V 
Sbjct: 63  KLALAQSLN--FSMMDIGETKASS----GFNKIIKIVN--GYAFDDTGNMSEEDAQQYV- 113

Query: 120 TGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDD 179
                               SL+E + D       V  S   +N+   T           
Sbjct: 114 --------------------SLAENHGDA------VVVSPVTFNEGQPT----------- 136

Query: 180 VQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGV 239
              +  S   FD    F V N          D + +  F +     ++       DK+GV
Sbjct: 137 ---ITFSVKRFDESVDFFVFNLSAFS-QMMTDYATEGSFAEL----MANGNVIFSDKHGV 188

Query: 240 NYDVLIKMSDFGG--WNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLM 297
           N   + +  +F G  W L+  ID    +++   L        ++ ASV     +  + + 
Sbjct: 189 NLTPITRPINFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVS 248

Query: 298 LKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEK 357
            KPL +L   + N+S G+ DLT R+   +  E  +I NS N+F+  LQ +  +V  +S++
Sbjct: 249 FKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKE 308

Query: 358 INCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQ 417
           I+              N++    +E +   +++ EM A++  IAQ   +A+ +T + N  
Sbjct: 309 IDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRY 368

Query: 418 VNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNA 477
            +E    V+    SV  LV ++      I  ++  T+ I+ +L+ I  IA+QTNLLALNA
Sbjct: 369 ADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNA 428

Query: 478 AIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIA 537
           AIEAARAGE GRGFAVVADEVR+LA +TQ+ST  I  ++  L+  +   V  MD +    
Sbjct: 429 AIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHC 488

Query: 538 SETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKD------ 591
            ET   +      L+ ++ SV ++ ++   +AT+A EQ  V+ E++ N  +I++      
Sbjct: 489 EETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLN 548

Query: 592 -KADTLSSLGNKISQQAYSQKALIG 615
             A  ++S+ N++   +++   ++G
Sbjct: 549 MNAAQVTSVSNELQNTSHALSDVVG 573