Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  261 bits (668), Expect = 5e-74
 Identities = 174/625 (27%), Positives = 322/625 (51%), Gaps = 17/625 (2%)

Query: 3   FSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVD 62
           FS K+L+    I++   S+      +   + L  ++K  + +        I   +ES++ 
Sbjct: 6   FSKKILLAAALIVVVAFSVFIVVNDYRQRQSLKSSVKSELQQLGTLTTQNIQTWLESRMQ 65

Query: 63  VSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGF 122
           + +S+    +   +G+      + + +   S  FQL  +    T  ++ + P+   P  +
Sbjct: 66  LLQSMSQ--QIAADGKELPQLQRAIGLPAYSESFQLSYFGS--TEGVMFSVPSANRPADY 121

Query: 123 DPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQE 182
           DPR R WY  A+      ++EPY+   + KL++T + P+  +N   GV   DI LD+V +
Sbjct: 122 DPRARGWYKAAQNAPGTIVTEPYIAASSGKLVMTMATPVKFQNQFVGVAGADIALDNVTK 181

Query: 183 LIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGVNYD 242
           +I S N    G  F+V   GKI+    + +  KN+   + +    ++   T+  +G N +
Sbjct: 182 IINSLNFDGHGYAFLVSADGKILVHPDSKLVLKNISEAYPTNTPKITTGVTEIDSGKNPE 241

Query: 243 VL----IKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLML 298
           ++    ++      W +  +++ D A + +   R ++I   V++  V   +L   +R+++
Sbjct: 242 IISFTPVQGVSTANWYVALVLEQDSAYAMLAEFRASAITAMVVVVVVIILLLGLLIRVLM 301

Query: 299 KPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKI 358
           +PLHQ+  AM +I+ G  DLT R+  ++  EF ++  SFN FV  + + + EV   + ++
Sbjct: 302 QPLHQMGRAMRDIADGEGDLTKRLAITSQDEFGELAESFNRFVERIHTSIREVASTAAQL 361

Query: 359 NCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQV 418
             + T   ++      +   Q    + +A+++NE+ A + +IAQ  +  S+ +S  +G  
Sbjct: 362 GEVATRVVKVSNASMGNSDQQANRTESVAAAINELGAAAQEIAQNAARTSQQSSDASGLA 421

Query: 419 NEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAA 478
           ++G   V    +++  L  K+ ++   I+ LN +T NI  IL+ I  I+ QTNLLALNAA
Sbjct: 422 SDGQNVVQQTIKAMNELSGKISESCVNIESLNGKTANIGQILEVITSISQQTNLLALNAA 481

Query: 479 IEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIAS 538
           IEAARAGE GRGFAVVADEVR+LA +TQ+S + + ++I  LQ  +  +V  M ES   + 
Sbjct: 482 IEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQTMIEELQVGARDAVTNMTESQRQSE 541

Query: 539 ETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN--------SNSISIK 590
           +++ I+  + + L ++++ + +I  +   VA A  EQ+ V E IN         N + + 
Sbjct: 542 DSVGIANLAGERLGSVTRRIEEINGMNQSVAAATEEQTSVVESINVDITHINTLNQLGVD 601

Query: 591 DKADTLSSLGNKISQQAYSQKALIG 615
           +   TL +  N + +QA   + L+G
Sbjct: 602 NLRQTLEAC-NSLEEQAARLQQLVG 625