Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  182 bits (461), Expect = 5e-50
 Identities = 163/625 (26%), Positives = 282/625 (45%), Gaps = 31/625 (4%)

Query: 15  IITISSILTYFQMHGTNEYL-DRTIKDTISETLDSLEDKINLSIESKVDVSKSVIDIYEN 73
           I+ +  I T      T+ YL D  +  +I    + +E  +   + +  D++ + + + + 
Sbjct: 24  ILVVVIIFTVALNRLTDRYLVDTALPASIEAIRNDIERMLGQPLVAAADIAGNTL-LRDW 82

Query: 74  LLEGESPLSKFKDVDV-------NHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRT 126
           L  GE P    + ++        NH         +A   TG     +   +  +  +P+ 
Sbjct: 83  LAAGEDPAQAPQFIEYLTAAKQRNHAFTTL----FASTETGHYYNENGLDRTLSRSNPKD 138

Query: 127 RSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIKS 186
           + W+               +D  T +L +     +  +  L GV    + + ++ +LI  
Sbjct: 139 K-WFYGYIDSGAERFINIDIDGATGELALFIDYRVEKEGKLVGVAGMGLRMTELSKLIHD 197

Query: 187 YNPFDAGTIFIVDNSGKIIFGNKNDISGKN-----LFGDFDSFPLSVSESKTKDK---NG 238
           ++  + G +F+V N G I        SGK      L  D     ++  ES    +   +G
Sbjct: 198 FSFGEHGKVFLVRNDGLIQVHPDAAFSGKRQLAEQLGADAAKGVMTGGESLRSSRFSRDG 257

Query: 239 VNYDVL-IKMSDFGGWNLVSIIDHDK--ARSDIITLRNNSIFTAVILASVFFAILLFTMR 295
             Y  L + + D   W LV+ +   +  A+        + I  AV L S+   +LL   R
Sbjct: 258 ERYLALGLPLRDLN-WTLVAEVPESEIYAQMHQAVWLTSLIGGAVALVSLLLVVLL--AR 314

Query: 296 LMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNS 355
            +++P+ ++T A+V I SG+ DL+ R+ +S   E   +   FN F+ + +S++ EV   S
Sbjct: 315 GLVRPIRRVTAALVQIGSGAGDLSHRLDDSRQDELGDLARGFNRFLDSQRSLIGEVLSTS 374

Query: 356 EKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKIN 415
           E++     +  ++V+        Q    +M+A++++EM  T   IA+   +A++ +    
Sbjct: 375 ERLRRAVEQVTQVVDNTAERSGRQQEMTEMVATAVHEMGLTVQDIARNAGDAAQASQSAR 434

Query: 416 GQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLAL 475
            +  +    V      +  +   + K    +  L  +  ++D +L  I  I++QTNLLAL
Sbjct: 435 DEALQAREVVQRSIRGIEGMSGDIGKAADAVSQLADEVASVDEVLAVIRSISEQTNLLAL 494

Query: 476 NAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFN 535
           NAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  +  +I  L+  +  +V  M     
Sbjct: 495 NAAIEAARAGEMGRGFAVVADEVRTLARRTQLSTDEVQQMIQRLKLGAGSAVSSMQAGQQ 554

Query: 536 IASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADT 595
                +  S  +   L  I+  V  I D+ +QVATA  EQS V+EEIN     I D A  
Sbjct: 555 ATGSGVESSQRTGASLSAITDQVEHISDMNHQVATATEEQSAVTEEINRTVQGISDLARE 614

Query: 596 LSSLGNKISQQAYSQKALIGHQDDL 620
            ++      ++    +AL G  DDL
Sbjct: 615 TAAEVQGCREEC---QALRGLADDL 636



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 318 LTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVA 377
           L  R   STD E  ++I    +  G   S VS ++   +       E+ +      +++ 
Sbjct: 520 LARRTQLSTD-EVQQMIQRLKLGAG---SAVSSMQAGQQATGS-GVESSQRTGASLSAIT 574

Query: 378 DQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTES-VGNLV 436
           DQ   +    S MN  VAT+      T E S +T +IN  V +G+  ++  T + V    
Sbjct: 575 DQVEHI----SDMNHQVATA------TEEQSAVTEEINRTV-QGISDLARETAAEVQGCR 623

Query: 437 EKLDKTKSVIQDLNRQ 452
           E+    + +  DL RQ
Sbjct: 624 EECQALRGLADDLARQ 639