Pairwise Alignments

Query, 340 a.a., toxin coregulated pilus biosynthesis protein E from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system protein F from Pseudomonas simiae WCS417

 Score = 45.1 bits (105), Expect = 3e-09
 Identities = 67/335 (20%), Positives = 144/335 (42%), Gaps = 16/335 (4%)

Query: 16  LVDLLNDNIPLYDALNKIQNEGVGIYDKNFIKSIELIKDRMKSNSSLTDALTGLIPDKEV 75
           L  LL   IPL  A + I     G  ++   + ++ +K  +++ +SL +AL       + 
Sbjct: 72  LATLLKAGIPLLQAFDIIAE---GFDNRALRERVQGLKQAIEAGTSLAEALRKQPRCFDE 128

Query: 76  LMINVA---ENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSVK 132
           L  N+    E +G + + +  +  +   ++++K++   +M  P  +L+V  +V     V 
Sbjct: 129 LYCNLVAAGEQAGALETLLERVAIHREKSEQLKTRIKKAMTYPITVLVVASLVTGVLLVH 188

Query: 133 VFPTFESVLP--VSRWPGVTQALYNLGFSLYEGLWIKVLIFVAIFITILVFMSKNITGNF 190
           V P F+++      + PG T  +  L   + +  W   L  +A  + +     +    +F
Sbjct: 189 VVPQFQNLFAGVDGKLPGFTLQVIGLSEFMQKAWWAVALGGLAGGLGLREAYRR--LADF 246

Query: 191 R---DGFLDKLP-PFNFVKHIAATEFLANMSMLLDSRVPFKEGLD-IVDHKTTRWLSSHL 245
           R   D  L K P     +   A   F   +S    + VP  + LD +     +      +
Sbjct: 247 RLWLDSCLLKAPVAGKLLSKSAVARFARTLSTTFAAGVPLLQALDSVAGAAGSGPFRRAI 306

Query: 246 QRMKANMQEGLDYKQALDTNLLDKKMLLTM-AVYSELPNFSDVMQKLAIEANINLHKKIA 304
           ++M+ ++  G+   Q++ T+ L   M + M A+  E      +++K+A     ++   + 
Sbjct: 307 EQMRRDVATGMPLNQSMLTSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVD 366

Query: 305 TLAGVMKNISLITLALSVIWIFGAIFSLVDKLSSS 339
            L  +M+ + ++ L   V  +  A++  V +L S+
Sbjct: 367 HLTHLMEPLIMVVLGGIVGALVIAMYLPVFQLGSA 401