Pairwise Alignments

Query, 340 a.a., toxin coregulated pilus biosynthesis protein E from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 67/325 (20%), Positives = 141/325 (43%), Gaps = 27/325 (8%)

Query: 16  LVDLLNDNIPLYDALNKIQNEGVGIYDKNFIKSIEL-IKDRMKSNSSLTDALTGLIPDKE 74
           L  L+   +PL + L  +  +     +K  I+++ + ++ ++    +L+D+L       +
Sbjct: 75  LATLVQSGMPLEECLRAVAEQS----EKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD 130

Query: 75  VL---MINVAENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSV 131
            L   M+   E SG + S +  +     +  +++SK   +MI P V+++  + ++A    
Sbjct: 131 ELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLLA 190

Query: 132 KVFPTF--ESVLPVSRWPGVTQALYNLG-FSLYEGLWIKVLIFVAIFITILVFMSKNITG 188
            V P    + V      P  TQ L +   F  + G+ + V + + I++   +    +I  
Sbjct: 191 AVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLLTKPDIRL 250

Query: 189 NFRDGFLDKLPPFNFV-KHIAATEFLANMSMLLDSRVPFKEGLDI-VDHKTTRWLSSHLQ 246
            + D  +  LP    + + +    F   +S+   S +P  +G+ + VD  T +++   + 
Sbjct: 251 RW-DRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQFVKQQVL 309

Query: 247 RMKANMQEGLDYKQALDTNLLDKKMLLTMAVYSELPNFSDVM-------QKLAIEANINL 299
               N++EG   ++AL+   L   M+L M    E     + M       Q  + E+ +N+
Sbjct: 310 AAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNI 369

Query: 300 ------HKKIATLAGVMKNISLITL 318
                    IA +AG++  I + TL
Sbjct: 370 ALGIFTPALIALMAGMVLFIVMATL 394



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 24  IPLYDALNKIQNEGVGIYDKNFIKSIELIK-DRMKSNSSLTDAL--TGLIPDKEVLMINV 80
           IP+ D +       V +    F+K   L   + ++  SSL  AL  T L P   + MI  
Sbjct: 286 IPILDGMRV----AVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIAS 341

Query: 81  AENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSVKVFPTFE 138
            E SG++   +     N  ++ E        + TP+++ ++  +V+      + P  E
Sbjct: 342 GEQSGELEGMLTRAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILE 399