Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., Type II secretion system protein E from Xanthobacter sp. DMC5

 Score =  130 bits (327), Expect = 1e-34
 Identities = 102/344 (29%), Positives = 167/344 (48%), Gaps = 34/344 (9%)

Query: 102 ASDIHFIREDRICKIKFRVNGTMIDYREILSSEADAL-MFVLYNVMATTKETTWNRKLPQ 160
           ASDIH        +++ R++G +     +    AD L   V+  +          R+LPQ
Sbjct: 188 ASDIHIGPFRTGLEVRLRIDGMLRPIHAL----ADVLPQAVISRIKILAGLDIAERRLPQ 243

Query: 161 DANIILVINEKAYRFRYAHMPLFGEGGKNYHAVVRIIYPSNNFVCTNYQDIGYNEADTDA 220
           D    L +       R A MP   + G++  AV+R++      +  +   +G    D + 
Sbjct: 244 DGAARLKLGRDEIDVRVAIMPT--QHGES--AVIRLLARDRGVLTVD--KLGLAPHDRET 297

Query: 221 IARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVEYLISGAQQ 280
           + ++L   +G+ +V+G TGSGK+T+L   + +L  N+   K   +T+EDPVEY I G  Q
Sbjct: 298 LMKLLALPHGMVVVTGPTGSGKTTTLATILSVL--NEPTRK--ILTIEDPVEYEIRGVFQ 353

Query: 281 SSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGHYCLTTIHA 340
           S +      +    FA A+RS +R+DPDVIM+GE+RD  T      A  +GH  LTT+H 
Sbjct: 354 SQV----RPQIGLTFAAALRSFLRQDPDVIMVGEVRDPETAHIAVHAALTGHLVLTTLHT 409

Query: 341 GSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLIPELCPSCKVSFV--------DERYQ 392
            +  + + R+  LG++   + S   L  + +Q+L+ +LC  CK            D RY 
Sbjct: 410 DTAAASVPRMLDLGVEGFLLKST--LRAVIAQRLVRQLCERCKRPHTLSSSDVRDDPRYA 467

Query: 393 RAVFSANEN-----GCEACNHSGFKGRLLLLETLVPTVEDLELV 431
                A E      GCE C  +G++GR+ + E L  + +  E++
Sbjct: 468 ALGLKAGETVYEPVGCERCGGAGYRGRIGVFEVLTLSDDIREMI 511