Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., type II secretion system protein E from Pseudomonas simiae WCS417

 Score =  123 bits (309), Expect = 1e-32
 Identities = 109/372 (29%), Positives = 172/372 (46%), Gaps = 40/372 (10%)

Query: 62  VSDANHKLLIA------NLVTEQQAKDLS--FIEKDIMKIASSATAYGASDIHFIREDRI 113
           VS A+ K++ A      NL   +Q  D +   I   +  +   A A  ASDIH       
Sbjct: 152 VSGADQKVVAAGNVDLLNLGAREQEPDANDAHIVNIVDWLLQYAFAQRASDIHIEPCREQ 211

Query: 114 CKIKFRVNGTMIDYREILSSEADALMFVLYNVMATTKETTWNRKLPQDANIILVINEKA- 172
            +++FR++G + D   +        M V+  + +  +     ++ PQD  +       A 
Sbjct: 212 GRVRFRIDGLLHD---VYQFPPQVTMAVVSRLKSLGRMNVAEKRRPQDGRVKTKSPTGAE 268

Query: 173 YRFRYAHMPL-FGEGGKNYHAVVRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGL 231
              R + +P  FGE       V+RI  P    +   +  +G +  D      +   ++G+
Sbjct: 269 VELRLSTLPTAFGE-----KLVLRIFDPQ--VLLKGFDQLGLSADDQRRWQSMTRQTHGI 321

Query: 232 FIVSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKT 291
            +V+G TGSGK+++L   +  L   +        TVEDP+E +     Q   V  N D T
Sbjct: 322 ILVTGPTGSGKTSTLYTTLRQLATREVN----LCTVEDPIEMVEPTFNQMQ-VQHNIDLT 376

Query: 292 KNPFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLS 351
              FA  +R+ +R+DPD+IMIGEIRD+ T E    A  +GH  L+T+H     S + RL 
Sbjct: 377 ---FASGIRALLRQDPDIIMIGEIRDQETAEMAIQAALTGHLVLSTLHTNDAPSAISRLQ 433

Query: 352 GLGMKADKIASPGFLAGITSQKLIPELCPSCKVSFVDERYQRAVFSANEN-GCEACNHSG 410
            LG+    I +   L G+ +Q+L+  LCP CK         R +  A+E  GC  C  SG
Sbjct: 434 ELGIAHYLIKAT--LLGVMAQRLVRVLCPHCK---------RTLGDAHEAVGCGECRQSG 482

Query: 411 FKGRLLLLETLV 422
           ++GR  + E +V
Sbjct: 483 YRGRAGVYEIMV 494