Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (419), Expect = 2e-45
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 28/365 (7%)

Query: 79  QAKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSEADAL 138
           +++D + I K I  +   A   GASDIH    ++   I+FRV+G +   RE+L+      
Sbjct: 116 ESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVL---REVLAPSRKLS 172

Query: 139 MFVLYNVMATTKETTWNRKLPQDANIILVINEKAYRFRYAHMPLFGEGGKNYHAVVRIIY 198
             ++  V    K     +++PQD  I L I  +A   R + MP           V+R++ 
Sbjct: 173 SLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMP----SSHGERVVMRLL- 227

Query: 199 PSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFFNKY 258
              N    +   +G    + D   R++   +G+ +V+G TGSGKST+L  Y  L   N  
Sbjct: 228 -DKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL--YAGLQELNSS 284

Query: 259 KGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEIRDK 318
           +     +TVEDP+E+ I G  Q+ +    + +    FA  +R+ +R+DPDV+M+GEIRD 
Sbjct: 285 ERN--ILTVEDPIEFDIDGIGQTQV----NPRVDMTFARGLRAILRQDPDVVMVGEIRDL 338

Query: 319 PTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLIPEL 378
            T +    A  +GH  ++T+H  + V  + RL  +G++   I+S   L G+ +Q+L+  L
Sbjct: 339 ETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSS--LLGVLAQRLVRTL 396

Query: 379 CPSCKVSFVDERYQRAVFSANE---------NGCEACNHSGFKGRLLLLETLVPTVEDLE 429
           CP CK  +  ++ QR +F + +          GC  CNH G++GR  + E L+      E
Sbjct: 397 CPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQE 456

Query: 430 LVASE 434
           L+ SE
Sbjct: 457 LIHSE 461