Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., putative Type II secretion system protein from Pseudomonas putida KT2440

 Score =  131 bits (329), Expect = 8e-35
 Identities = 104/357 (29%), Positives = 163/357 (45%), Gaps = 32/357 (8%)

Query: 80  AKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSEADALM 139
           ++D S + K +      A    ASDIH     +   IK+R++G +    +   S     +
Sbjct: 204 SEDQSRVVKLVNSTLYDALKLHASDIHLGMTGQGLTIKYRIDGVLNGAGKASGSAFADQV 263

Query: 140 FVLYNVMATTKETTWNRKLPQDANIILVINEKAYRFRYAHMP-LFGEGGKNYHAVVRIIY 198
                VMA        +++PQD    + + ++   FR + MP +FGE      AV+R++ 
Sbjct: 264 ISRIKVMAELD--IGEKRVPQDGRFKVAVGDRQIDFRVSIMPSIFGED-----AVLRVLD 316

Query: 199 P---SNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFF 255
               S+       Q +G+ +    A+ R+    YG+ +V+G TGSGK+T+L   I  +  
Sbjct: 317 KQDLSDRVSGVQLQALGFADETLRALRRLAAEPYGMILVTGPTGSGKTTTLYAMISEI-- 374

Query: 256 NKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEI 315
               G    +T+EDPVEY + G  Q  +    ++K    FA  +RS +R DPD I++GEI
Sbjct: 375 --NHGVDKIITIEDPVEYQLPGVLQIPV----NEKKGLTFARGLRSILRHDPDKILVGEI 428

Query: 316 RDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLI 375
           RD  T +    +  +GH   TTIHA +V  V+ R S   M+ D  +    L  + +Q+LI
Sbjct: 429 RDPDTAQIAVQSALTGHLVFTTIHANNVFDVIGRFS--QMQVDPYSFVSALNAVLAQRLI 486

Query: 376 PELCPSCKVSFV---DERYQRAVFS--------ANENGCEACNHSGFKGRLLLLETL 421
              CP C        D  Y   +              GC  C  SG++GR  + E L
Sbjct: 487 RLACPHCATPCEHDDDTLYGSGLTREGVAGWTFVRVKGCGHCRGSGYRGRSAIAELL 543