Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., putative type II secretion system protein HxcR from Pseudomonas sp. DMC3

 Score =  132 bits (331), Expect = 3e-35
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 24/325 (7%)

Query: 90  IMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSEADALMFVLYNVMATT 149
           I  + + A    ASDIH    +    +++RV+GT+   R+++S        ++  +    
Sbjct: 105 INALLTQAARDEASDIHIEPFETHSVVRYRVDGTL---RDVVSPRKALHGALVSRIKIMA 161

Query: 150 KETTWNRKLPQDANIILVINEKAYRFRYAHMPLFGEGGKNYHAVVRIIYPSNNFVCTNYQ 209
           +     ++LPQD  I L +  +    R + +P     G     V+R++      +  + +
Sbjct: 162 QLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPT----GHGERVVMRLLDKQAGRL--HLE 215

Query: 210 DIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVED 269
            +G +      +  ++   +G+ +V+G TGSGK+TSL   +  L  +        +TVED
Sbjct: 216 TLGMDAQVLAKLDHLIRQPHGIVLVTGPTGSGKTTSLYAALARLDASTSN----ILTVED 271

Query: 270 PVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVE 329
           PVEY + G  Q  + A    K    FA A+R+ +R+DPD+IMIGEIRD  T +    A  
Sbjct: 272 PVEYDLPGISQIQVNA----KIDMTFALALRAILRQDPDIIMIGEIRDLETAQIAVQASL 327

Query: 330 SGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLIPELCPSCKVSFVDE 389
           +GH  L T+H    VS + RL  +G++   +AS   + G+ +Q+L+  LC  CK     +
Sbjct: 328 TGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASS--MLGVLAQRLVRRLCNQCK-----Q 380

Query: 390 RYQRAVFSANENGCEACNHSGFKGR 414
                  +    GC ACNH+G+ GR
Sbjct: 381 EDPATPGTWRPVGCAACNHTGYSGR 405