Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Type IV fimbrial assembly, ATPase PilB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  129 bits (324), Expect = 2e-34
 Identities = 109/347 (31%), Positives = 165/347 (47%), Gaps = 32/347 (9%)

Query: 96  SATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSEADAL---MFVLYNVMATTKET 152
           SA A  ASDIH        +I+ R++G +   ++I      AL   + VL N+       
Sbjct: 91  SAMAKRASDIHLEPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIA---- 146

Query: 153 TWNRKLPQDANIILVINEKAYRFRYAHMPLFGEGGKNYHAVVRIIYPSNNFVCTNYQDIG 212
               +LPQD    + +   +  FR A +P   EG K    V+R+++     +  +   +G
Sbjct: 147 --EHRLPQDGQFTVDLAGDSISFRIATLPC-KEGEK---VVLRLLHQVEQTL--DLDTLG 198

Query: 213 YNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVE 272
              A   A  + L    GL +V+G TGSGK+ +L  Y  L   N      C  +VEDP+E
Sbjct: 199 MYGAQLTAFRQALQQPQGLVLVTGPTGSGKTVTL--YSALQTRNTPGINLC--SVEDPIE 254

Query: 273 YLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGH 332
             + G  Q+ I      +    F + +R+ +R+DPD+IM+GEIRD  T E    A ++GH
Sbjct: 255 IPLDGINQTQI----HPRAGLTFQNVLRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGH 310

Query: 333 YCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLIPELCPSCKVSFVD---- 388
             L+T+H  S    L RL  +G+    I+S   L  + +Q+L+ +LCP CK    D    
Sbjct: 311 LVLSTLHTNSTSETLIRLQQMGVARWMISSA--LTLVVAQRLVRKLCPHCKQRLSDPVVL 368

Query: 389 --ERYQRAVFSANENGCEACNHSGFKGRLLLLETLVPTVEDLELVAS 433
               +  A+     +GC+ C H GF GR  L E L  T    +L+AS
Sbjct: 369 SPNLWPSAIPRWQASGCQHCYH-GFYGRTALFEVLTVTPALRQLIAS 414