Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  155 bits (393), Expect = 4e-42
 Identities = 140/523 (26%), Positives = 231/523 (44%), Gaps = 47/523 (8%)

Query: 122 RDWFVKTVELGTKHYTAFDIDKTTGQHVLTIATPVYVGNDIVGSVALDIAGDQIASPNGS 181
           R W+           T   ID  TG+ ++++ATP   G   +G V  D++   +    G+
Sbjct: 126 RPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQSIGVVGGDLSLQTLVDNIGA 185

Query: 182 GMFMMTDRNFNVFASD--LTH--STLIGKDLTKEKPLFKNLVSGQYVTFSDADSHWFAVS 237
             F      F V A    L H    L+ K L    P     +S  +             S
Sbjct: 186 LNFGGMGYAFLVSADGKVLVHPDKNLVMKTLADVYPKNTPKISADF-------------S 232

Query: 238 QTEIDGENKLFTIIDIQQI----------VQTYKRDIQL-------IIAGFSGFSCVMLI 280
           + E +G++ + T I I+ +          V   K    L       +IA F   + V++I
Sbjct: 233 EVEANGKDNIVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATF--IAVVIII 290

Query: 281 GLYWVLSKELSG-----VRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLL 335
            L  +L + L        R +++  +A  +G +  R  I+ H+E   +  +      R+ 
Sbjct: 291 ALLGMLIRILMQPLHLMTRAMQD--IADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIH 348

Query: 336 DVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQ 395
             +R        ++     +  +   +  NS ++      VA A  QL   + ++ + A 
Sbjct: 349 TSIREVSSATEHVNEVALRVVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAA 408

Query: 396 SAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINN 455
            A   A  A+ L  +   +++ + K    ++  I  S   I  L   + NI  + +VI +
Sbjct: 409 QASHQASDARHLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITS 468

Query: 456 ISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQL 515
           IS QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ+S   +Q +I +LQ  ++ 
Sbjct: 469 ISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGAR- 527

Query: 516 ADQVMTRNVSLIHETQVANRALIAS--FNLISDKVLEISNINSIVSTAANEQKIVTEDVA 573
            + V T   S  H  +  + A +A    N ++ ++ EI  +N  V+TA  EQ  V E + 
Sbjct: 528 -ESVSTMGESQRHSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESIN 586

Query: 574 KQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
             + +I  L QE +  ++ T +A  ++      L   +  F+I
Sbjct: 587 MDITEINTLNQEGVENLQSTLRACADLEQQAARLKQLVGSFRI 629