Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  152 bits (385), Expect = 3e-41
 Identities = 100/336 (29%), Positives = 176/336 (52%), Gaps = 5/336 (1%)

Query: 284 WVLSKELS-GVRQIREWILALSDGQIKERRPIKFH--NELDTIAQSLENLQFRLLDVVRN 340
           W+L++ ++  + Q  E    +++G +   RPIK    +E   +  ++  +Q +L D ++ 
Sbjct: 208 WLLTRSITLPIAQALEAAEEVAEGNLT--RPIKVDGSDEAGRLLAAMAKMQDKLRDTLQR 265

Query: 341 SHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELN 400
              +   L+    ++    + +     Q+   IEQ ATA  +++    +V + A S    
Sbjct: 266 IAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEA 325

Query: 401 AETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQT 460
           +  A     +  D++  +    E ++  +  +  +I  L   S +I  V DVI  ++DQT
Sbjct: 326 SRNATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLADQT 385

Query: 461 NLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVM 520
           NLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQQST +I+ +I  +Q  ++ A   M
Sbjct: 386 NLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSM 445

Query: 521 TRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIR 580
             +      T    +    S + I+  ++EI+  N ++++AA EQ  V  +V + + +IR
Sbjct: 446 RNSTERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIR 505

Query: 581 YLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
            L  ++ +   +T  A+  +S L  +LN  +  F++
Sbjct: 506 DLSVQSATGASQTSAASSELSRLAVDLNGMVGRFRL 541