Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  164 bits (414), Expect = 1e-44
 Identities = 169/639 (26%), Positives = 300/639 (46%), Gaps = 54/639 (8%)

Query: 7   SVFLLLACIITLAFTAFFYHSKLSDQTKSISSLSSQQAQERLQSYQDSLDFYKKLNTSLS 66
           S  LLLA +  L+ + +F   K+ D+ +S+ S S  +  + +      +     +N   S
Sbjct: 11  SSVLLLATVALLSGSQYF---KVRDEIRSMVSDSVDEIVDGVSKTTAEV-----INGRKS 62

Query: 67  VA-IANSLRDKAVEELNAIALRIQE--NHGFIGVTFA-SLDGTMFTDIGTLD----WNAK 118
           +A  A SL +   E  N   +  Q    + F+ V F    DG+   +  + +    W+ +
Sbjct: 63  IAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPGPTWDPR 122

Query: 119 TLRRDWFVKTVELGTKHYTAFDIDKTTGQHVLTIATPVY--VGNDIVGSVALDIAGDQIA 176
              R W+      G    TA   D  +G+ ++++ATPV        +GS+  D++  ++A
Sbjct: 123 V--RPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180

Query: 177 S-PNGSGMFMMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNLVSGQYVTFSDADSHW-- 233
              N   +F   D  +    S+   +    K     KP+ + L   +     + D+H   
Sbjct: 181 ELVNEVKLF---DAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKI----NVDTHQVI 233

Query: 234 -----FAVSQTEIDGENKLFTIIDIQQIVQTYKRDIQLIIAGFSGFSCVM----LIGLYW 284
                +AVS ++++GE+    ++  ++I      +++     F+  + V+    L+ +  
Sbjct: 234 INGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVR 293

Query: 285 VLSKELSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRT 344
           VL K L  +    + + A  +G + +R       E   +A         L   +  S   
Sbjct: 294 VLMKPLDTLNDAIQNV-ASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAI 352

Query: 345 MNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETA 404
             ++       + +++ +    + +L  +EQ+ATA  +++ TS DV   AQ A   A+ A
Sbjct: 353 GAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVA 412

Query: 405 QKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLA 464
               A   D++  ++K  + ++ +I  +   +  L   + NI +V  VIN+I+DQTNLLA
Sbjct: 413 DDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLA 472

Query: 465 LNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRN- 523
           LNAAIEAARAGE GRGFAVVADEVR+LA +TQQST +I+ +I KLQ  +      M+ + 
Sbjct: 473 LNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSK 532

Query: 524 ---VSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIR 580
               S +++ Q AN AL      I   + +IS++N  +++AA EQ +V E++      I+
Sbjct: 533 DTAASAVNQAQGANEAL----EKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIK 588

Query: 581 YLVQENLSAMERTKQANQNISDLTTNLND---ALSFFKI 616
            L  +     E   +AN ++   T N+ +    L+ FK+
Sbjct: 589 DLSDQ---VAESADEANMSMQIQTENIREQDAILNKFKV 624