Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., Transposase from Variovorax sp. SCN45

 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 29/233 (12%)

Query: 65  LTDELRALILTMRD-KRNLGARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVTYRRKK 123
           +T EL + I+ +   +R  G RR+  +++R H   ++   ++++ S A++   V  RRK 
Sbjct: 1   MTQELSSKIVEIAHVRRRFGYRRIH-DMLRPHFPGVNHKKVYRLYSAANLA--VRKRRKA 57

Query: 124 DFQRYERPIPGDRVQMDTCKIAPGIYQYTAIDDC-SRYRVLRC------YSRRTAANTVD 176
                +RP+  +RV +   +    ++    + D  S  R ++C      +S    + +VD
Sbjct: 58  -----KRPV-SERVPLQLARTVNEVWSMDFVSDSLSTGRRIKCLTVADDFSHECVSISVD 111

Query: 177 F----------IDCVVEEMPFPIQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHL 226
           +          +D       +P+  ++TD G EF +         +GI+    +PG P  
Sbjct: 112 WGISGQYVTRLLDQAAVFRGYPLA-VRTDNGPEFTSRAFMGWAQTHGIRHILIEPGRPMQ 170

Query: 227 NGKVERSQKTDKSEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTP 279
           NG +E      + E          +Q    + A W+  YN  RPHSS   + P
Sbjct: 171 NGYIESFNGKFRDECLNEQWFETLMQARSAITA-WRQDYNEVRPHSSCGRMPP 222