Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

 Score = 76.6 bits (187), Expect = 9e-19
 Identities = 75/270 (27%), Positives = 119/270 (44%), Gaps = 15/270 (5%)

Query: 24  VCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRDK-RNL 82
           +CRR GIS  T  KW +R+ Q G AGL+ + R PH SP+ + +D++ AL+    D+    
Sbjct: 33  LCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPN-RSSDDITALLRMAHDRHERW 91

Query: 83  GARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVTYRRKKDFQRYERPIPGDRVQMDTC 142
           GAR+++  L        + +T+H +++   + P  +        R+E   P    QMD  
Sbjct: 92  GARKIKRWLEDQGHTMPAFSTVHNLMARHGLLPGASPGIPAT-GRFEHDAPNRLWQMDFK 150

Query: 143 KIAP----GIYQYTAIDDCSRYRVLRCYSRRTAANTV-DFIDCVVEEMPFPIQRIQTDRG 197
              P      +  T +DD SR+ +   +       TV   +  V E    P  R+  D G
Sbjct: 151 GHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLP-DRMTMDNG 209

Query: 198 REF-----FAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTIDVSVGLQ 252
             +         ++  LM  GI+   ++P  P   GK+ER  ++ K+E            
Sbjct: 210 SPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQG-KWFADSG 268

Query: 253 ELDLLLAEWQHYYNWERPHSSLNGLTPIDR 282
           EL      W+  YN ERPH +L+   P  R
Sbjct: 269 ELQRAFDHWRTVYNLERPHEALDMAVPGSR 298