Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., IS481 family transposase from Erwinia tracheiphila SCR3

 Score = 60.5 bits (145), Expect = 6e-14
 Identities = 74/309 (23%), Positives = 113/309 (36%), Gaps = 42/309 (13%)

Query: 5   IQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTK 64
           I+ +   + + EE G+    C+  G+SR T  ++ +   + GI  L +Q+RR  +  +  
Sbjct: 9   IKHKAGLLNLAEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDALINQNRRVPNLKNRA 68

Query: 65  LTDELRALILTMRDKRNLGARRLQTELI-------------------------RLHKIHL 99
                RA++    +    G  R   EL                          RL  +  
Sbjct: 69  DEATERAVVEYAVEFPAHGQHRTSNELRKKGVFISGSGVRSIWQQHDLENFRKRLKALEE 128

Query: 100 STATLHKVLSEASVKPIVTYRRKKDFQ-RYERPIPGDRVQMDT-----CKIAPGIYQYTA 153
             A    VL++A +  +       +     E   PG     DT      K    IYQ T 
Sbjct: 129 KVAREGIVLTDAQIAALEKKAHDDEASGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTF 188

Query: 154 IDDCSRYRVLRCYSRRTAANTVDFIDCVV----EEMPFPIQRIQTDRGREFFAEKVQKQL 209
           +D  S+    + Y+ +T     D ++  V    E    P+ RI TD G E+  +  Q   
Sbjct: 189 VDTYSKVAHCKLYTSKTPITAADLLNDRVLPFYEAQGLPMLRILTDSGTEYCGKVEQHDY 248

Query: 210 MIY----GIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTI---DVSVGLQELDLLLAEWQ 262
            +Y     I     K  SP  NG  ER  KT   +FY       +   L+ L   L  W 
Sbjct: 249 QLYLAINDIDHTKTKAMSPQTNGICERFHKTILQDFYQVTFRKKLYEDLESLQTDLDNWL 308

Query: 263 HYYNWERPH 271
            +YN ER H
Sbjct: 309 WHYNNERTH 317