Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., IS481 family transposase from Erwinia tracheiphila SCR3

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 75/317 (23%), Positives = 122/317 (38%), Gaps = 50/317 (15%)

Query: 5   IQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDT- 63
           I+ +   + + EE G+    C+  G+SR T  ++ +   + GI  L +Q+RR  +  +  
Sbjct: 9   IKHKAGLLNLAEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDALINQNRRVPNLKNRA 68

Query: 64  ---------------------KLTDELR--ALILTMRDKRNLGARR-LQTELIRLHKIHL 99
                                + ++ELR   + ++    R++  R  L+    RL  +  
Sbjct: 69  DEATERAVVEYAVEFPAHGQHRTSNELRKKGVFISGSGVRSIWQRHDLENFRKRLKALEE 128

Query: 100 STATLHKVLSEASVKPIVTYRRKKDFQ-RYERPIPGDRVQMDT-----CKIAPGIYQYTA 153
             A    VL++A +  +       +     E   PG     DT      K    IYQ T 
Sbjct: 129 KVAREGIVLTDAQIAALEKKAHDDEASGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTF 188

Query: 154 IDDCSRYRVLRCYSRRTAANTVDFIDCVV------EEMPF------PIQRIQTDRGREFF 201
           +D  S+    + Y+ +T     D ++  V      + +PF      P+ RI TD G E+ 
Sbjct: 189 VDTYSKVAHCKLYTSKTPITAADLLNDRVLPFYEAQGLPFYEAQGLPMLRILTDSGTEYC 248

Query: 202 AEKVQKQLMIY----GIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTI---DVSVGLQEL 254
            +  Q    +Y     I     K  SP  NG  ER  KT   +FY       +   L+ L
Sbjct: 249 GKVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTILQDFYQVTFRKKLYEDLESL 308

Query: 255 DLLLAEWQHYYNWERPH 271
              L  W  +YN ER H
Sbjct: 309 QTDLDNWLWHYNNERTH 325