Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., ATP-dependent RNA helicase YejH from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 24/349 (6%)

Query: 218 PNAVQVEALTALNATRAQGFSRGLVVLATGMGKTWLAAF--DALQTQSTKVLFVAHREEI 275
           PN  Q  AL  L     +  +  +V   TG GKT LAAF  D   ++  +V+F    + +
Sbjct: 6   PNFAQERALNMLRRDW-KSHNTFMVYAPTGSGKTGLAAFIVDGFVSRGMRVMFCVPYQIL 64

Query: 276 LLQAEKTFCQL-IPNAKTGLY--NGVTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIV 332
           + Q    F +  +   + G    +    N    +  AS  T+     ++R   D+ D ++
Sbjct: 65  ITQTASRFIEYGLSGDEIGYVWASHPNHNPALKIQIASADTL-----IRREFPDNIDLLI 119

Query: 333 VDEFHHAAARSYRNLLTYFKPKF-LLGLTATPERSDQADILSLCDSNLVFERNLVHGIDE 391
           +DE H    R  +++         ++GL+ TP     +  L      L+    +   I  
Sbjct: 120 IDEAHLRKKRILQDIERLRASGVKVIGLSGTPF----SPFLGKYYDRLIKPTTIGELIQR 175

Query: 392 KILVPFDYHGIYD---QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQK-KQT 447
             L  ++++       + V  +        ++   L   +        + Q+W +  +  
Sbjct: 176 GDLSKYEFYAPTKPDLKGVKTKSSLEYGSDYNEAQLAEIMCGSTLVGDIVQNWLENGRDL 235

Query: 448 RTLAFCVSKKHADFMAEFCLSKGIKAIAVYSDSKV-RRNQALQWLDSGKIDILFSVDLFN 506
            T+AFCV+  HA+++       GI A  + +D+ V  R   +   ++G   I+ SV +  
Sbjct: 236 PTIAFCVNVAHANYLTIQFNLAGINAEVMTADTPVDERQTIIHRFETGATKIIVSVGVLV 295

Query: 507 EGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIG 555
            G D   +  I+  RPT+S+I +LQ +GRGLR +    K   ++ D  G
Sbjct: 296 AGFD-SDVRCIIYARPTKSEIRWLQAIGRGLRTA--PGKESCLIFDHSG 341