Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1170 a.a., endonuclease R (RefSeq) from Escherichia coli BW25113

 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 95/401 (23%), Positives = 153/401 (38%), Gaps = 72/401 (17%)

Query: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAA---FDALQTQSTK-VLFVAHREEILL 277
           Q +A+ A+     +G    L+ +ATG GKT  A    F  +Q+Q  K +LF+  R  +  
Sbjct: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508

Query: 278 QAEKTFCQLIPNAKT--GLYN--GVTQNTQAMLLFASVATIGKQNHLQR-------FAAD 326
           QA   F     N  T   +++  G+T           VAT+  Q+ ++R           
Sbjct: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATV--QSLVKRTLQSDEPMPVA 566

Query: 327 HFDYIVVDEFHHAA-------------------ARSYRNLLTYFKPKFLLGLTATPERSD 367
            +D IVVDE H                        +YR +L +F     + LTATP    
Sbjct: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHT 625

Query: 368 QADILSLCDSNLVFERNLVHG--IDE----KILVPFDYHGIYDQAVNYQEIPWRNGKFDP 421
              I         +   ++ G  ID+    +I+      G+Y       E     G+   
Sbjct: 626 -VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684

Query: 422 DSLDN-------------ALATQRRA--EHVYQHWHQKKQTRTLAFCVSKKHADFMAEFC 466
           D+L++              +    RA    +  +       +TL FCV+  HAD + E  
Sbjct: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744

Query: 467 LSK-----------GIKAIAVYSDSKVRRNQAL--QWLDSGKIDILFSVDLFNEGTDLPA 513
            +             I  I   +D   R+ Q +  ++      +I+ +VDL   G D+P+
Sbjct: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804

Query: 514 IDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFI 554
           I  I+ LR   S+IL+ Q  GR  R   E  K+   + D +
Sbjct: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845