Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., DNA damage response helicase (yejH or radD) (from data) from Escherichia coli BW25113

 Score = 76.6 bits (187), Expect = 4e-18
 Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 49/353 (13%)

Query: 241 LVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEKTFCQLIPNAKTGLYNGVTQ 300
           ++VL TG GK+ + A +  +    +VL +AH +E++ Q    +  L   A         +
Sbjct: 28  VIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRK 86

Query: 301 NTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAA---ARSYRNLLTYF---KPK 354
            +   ++F SV ++ +  +L  F  + F  ++VDE H         Y+ +LT+     P 
Sbjct: 87  ESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPH 143

Query: 355 F-LLGLTATP----------------ERSDQADILSLCDSNLVFERNLVHGI---DEKIL 394
             LLGLTATP                 R D+  +   C   L     + HG     E++ 
Sbjct: 144 LRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD 203

Query: 395 VP---FDYHGIYDQAVNYQEIPWRNGKFDPDSLDNALATQRR-AEHVYQHWHQKKQTR-- 448
           +P   +D+  +  Q+         NG F    L+  L  Q+R   H+     +   TR  
Sbjct: 204 MPVVQYDFSRLQAQS---------NGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG 254

Query: 449 TLAFCVSKKHADFMAEFCLSKGIKAIAVYSDSKVRRNQALQWLDSGKIDILFSVDLFNEG 508
            + F  + +HA  +     ++   A+         R+  ++   + +   L +V +   G
Sbjct: 255 VMIFAATVEHAKEIVGLLPAEDA-ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTG 313

Query: 509 TDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGN-HDSF 560
            D P +D I +LRPTES  L+ Q +GRGLR  +   K+  +++D+ GN HD +
Sbjct: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLR--LAPGKTDCLILDYAGNPHDLY 364