Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1142 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 97.1 bits (240), Expect = 6e-24
 Identities = 125/531 (23%), Positives = 209/531 (39%), Gaps = 89/531 (16%)

Query: 235 QGFSRGLVVLATGMGKTWLAA--FDALQ--TQSTKVLFVAHREEILLQAEKTFCQLIPNA 290
           Q   + L+++ATG GKT  +A   D +     + ++LF+A R  ++ QA+  F + +P+ 
Sbjct: 388 QRHRKSLLIMATGSGKTRTSASIVDMMVKCNWAKRILFLADRNALVTQAKNAFTEHLPDL 447

Query: 291 KTGLYNGVTQNTQAMLLFASVATIGKQNHLQR------FAADHFDYIVVDEFHHAAARSY 344
            +       +N    L+F++  T+  Q    R      +   HFD I++DE H +  + Y
Sbjct: 448 TSIDLTKEKENDSTRLVFSTYPTMMNQIDQARDGEGRFYGVGHFDLIIIDEAHRSVYQKY 507

Query: 345 RNLLTYFKPKFLLGLTATPERS---DQADILSLCDSNLVFERNLVHGIDEKILVP----- 396
           R +  YF   F+LGLTATP++    +  ++  + D N  F   L   +++  LVP     
Sbjct: 508 RAIFQYFDA-FILGLTATPKKDVDHNTYELFEIEDDNPTFAYELDQAVNDSFLVPPRAIS 566

Query: 397 ----FDYHGI-YDQAVNYQEIPWRNGKFDP------DSLDNA-----LATQRRAEHVYQH 440
               F   GI Y +    +++ +     DP      D +D +     L      + V  H
Sbjct: 567 VPLKFMREGIKYSELSEKEKLEYEEKFGDPSNEEAEDGIDKSQLYKWLFNSNTVDQVLNH 626

Query: 441 WHQK--------KQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYSDSKVR-----RNQA 487
                       K  +T+ F  + KHA ++ E    +  K    YS    R       +A
Sbjct: 627 LMTSGIKVDGGDKIGKTIIFAKNHKHAVYIEE----RFNKNYPEYSGKFCRVIDNQTEKA 682

Query: 488 LQWLDSGKID-------ILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRS 540
              L+   +D       I  SVD+ + G D P +  ++  +P  S   F Q +GRG R  
Sbjct: 683 QDILERFVLDKEEKEPQIAISVDMMDTGVDAPRVVNLVFFKPVRSVAKFWQMIGRGTRLR 742

Query: 541 IE-----TQKSKLVVIDFIGNHDSFLNRPTTLYNVSHLKDALAKHQQQALPDGCHVTFDI 595
                    K   ++ D+  N + F   P         K +L     Q       +  D+
Sbjct: 743 PNLFGPGQHKDSFLIFDYCENFEFFEVNP------EESKGSLGLSLTQ---QAFQLRLDL 793

Query: 596 TLLNFWQQLTRKMRFSVQDEYQQLAHQLAHRPTAS---EFFY--HGIEISKVRKQAQSWF 650
            L        R+     ++E+ +    L H   A+   E F   H +E +   KQ   W 
Sbjct: 794 AL------ALRESNSKEENEFAEELISLLHSQVAALNQERFVVRHHLEFAVKFKQKDQWA 847

Query: 651 HLVASQENDPELAEIVTRYGDFLLHGIESTGMSKSFKAILLEALLELDGLR 701
            L  S     +L EI T     +L   +    ++ F  ++L   L L G R
Sbjct: 848 DLGPS-----KLQEIGTHIVPLILSEDDDDVSARRFDVLMLNFQLALKGGR 893