Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1150 a.a., Type-1 restriction enzyme R protein from Alteromonas macleodii MIT1002

 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 116/551 (21%), Positives = 197/551 (35%), Gaps = 116/551 (21%)

Query: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLA---AFDALQTQS-TKVLFVAHREEILL 277
           Q +A+ ++         R LV +ATG GKT       +  L+ +   ++LF+  R  + +
Sbjct: 431 QKKAIQSVEQAIKDEKERALVAMATGTGKTKTCIALVYRLLKAERFRRILFLVDRSALGV 490

Query: 278 QAEKTFCQL-------------------------IPNAKTGLYNGVTQNTQAMLLFASVA 312
           QA   F ++                          P+  T ++    Q     +++ S  
Sbjct: 491 QATIDFGEVRMENLNTFADTFDVLGMEPEKNPKPTPDDDTKVHVATVQGLVKRIMYPS-- 548

Query: 313 TIGKQNHLQRFAADHFDYIVVDEFHHAA-------------------ARSYRNLLTYFKP 353
                    +     +D IVVDE H                         YR ++ YF  
Sbjct: 549 -----EDATKPGVGQYDCIVVDECHRGYLLDRELSETEVKFRDQQDYVSKYRAVIDYFDA 603

Query: 354 KFLLGLTATPERSDQADILSLCDSNLVFERNLVHGIDEKILVPFDYHG------------ 401
            F +GLTATP      DI      +  +   ++ G     L P   H             
Sbjct: 604 -FKIGLTATPA-IHTTDIFGDPVFSYSYTEAVIDGYLVDHLPPVRIHTKLNTDGIHYNVN 661

Query: 402 ----IYDQAVNYQEIPWRNGKFDPDSLDNALATQRRA------EHVYQHW-------HQK 444
               +YD   N  E+        PD LD  +A   R             W          
Sbjct: 662 EEVQVYDPQTNQLELI-----HTPDELDFDVAQFNRKVIAPEFTKAIAKWLIESDSIDPY 716

Query: 445 KQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYSDSKVRR-----NQALQWLDSGKID-- 497
            Q +TL FCV+ KHAD M E              D  + +     ++ LQ +   K D  
Sbjct: 717 SQEKTLIFCVTDKHADEMVEALKDACEHYHGAVDDDAIMKITGASDKPLQLIRRYKNDRL 776

Query: 498 --ILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIG 555
             I+ +VDL   G D+P+I  ++ +R   S+IL+ Q LGR  RR  +  K +  + D + 
Sbjct: 777 PNIVVTVDLLTTGVDVPSICNLVFMRRVNSRILYEQMLGRATRRCDDIAKERFRIYDAVD 836

Query: 556 NHDSFLNRPTTLYNVSHLKDALAKHQQQALPDGCHVTFDITLLNFWQQLTRKMRF---SV 612
            +       T    V+++    +K + +          ++    F  +L  K R+   S 
Sbjct: 837 IYKQLEKVNTMKPVVTNVDITFSKLESEIKEGKDSKLQELARDQFLSKLQSKKRYLTESQ 896

Query: 613 QDEY--------QQLAHQLAHRPT--ASEFFYHGI---EISKVRKQAQSWFHLVASQEND 659
           Q E+        Q+ A +L  +P    +++F +     E+  ++ +    F  +   E++
Sbjct: 897 QSEFERIVGKPPQEFAQELKAKPVHEVADWFLNNPGLGELLDMKVKGTGGFTRIVISEHE 956

Query: 660 PELAEIVTRYG 670
            E+ +  T YG
Sbjct: 957 DEVLDTSTGYG 967