Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1012 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 57.4 bits (137), Expect = 3e-12
 Identities = 91/395 (23%), Positives = 158/395 (40%), Gaps = 59/395 (14%)

Query: 191  LLMLLSALGAWIFTRHIKQQMFNMEPEEIAMNLNLQQSILQSVYEGIVAISLKGEILSVN 250
            L M+   L   I  + I++ + N E         L +++L +  +G + ++ +G IL+ N
Sbjct: 635  LRMVADTLAGIIRRKQIEETLRNSE--------ELSKTLLNATIDGALLMTPEGRILATN 686

Query: 251  AKALNILGIAHQPTHLIGRNVQEFITPTCFFMGASPFGK-LAQQNRVSQQDELISCNGET 309
             +AL     A  P  + G +  +++           F + LA +  +   DE     G  
Sbjct: 687  -EAL-AARFATTPAQMPGTSFFDWLPQPLAERRRDQFAQVLADRRPLHSVDE----RGGA 740

Query: 310  LVANRV-PINSGQQQIGWVVSFRR-----RNDFNTLTSQLTQIRQHNDNLR----VMSHE 359
            +  NR+ P+  G  +I  +  F R     R+    +   L  + + N  L     V SH+
Sbjct: 741  IFDNRIYPVQDGDGEIRRMAVFSRDVTEQRHAQKAIEKALADLARSNAELEQFAYVASHD 800

Query: 360  FANRLSTIGG---LIQIGAYDE-----------AVKTIRRETAEQQQLIDFIAQTFHPKV 405
                L  I G   L+Q  A D+           AV   RR     + L+D+       + 
Sbjct: 801  LREPLRAITGHLQLLQRLAKDKLDDYALESLLFAVDGARRMDLLIRDLLDYSRIGHADRE 860

Query: 406  IAGLLLGKY----------SRAKELGLCLEFDPLSHLHQEPQCMTSDELAAVLGNLLDNA 455
            +  L LG+           + A+          + H H         EL  +  NL+ NA
Sbjct: 861  MEDLDLGEVIADALSNLSAAIAEGHATVTTATGMPHAHGNRM-----ELTRLFQNLIGNA 915

Query: 456  FEATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL--KGVSSKNQ-EGH 512
             +   +NP     + L     G    I + DNGIGI  +    +F+  + +  + Q EG 
Sbjct: 916  LK--YRNPERPPEVELRAVRVGGAWDISIRDNGIGIEPEYFNRIFMIFQRLHGRGQYEGT 973

Query: 513  GIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFIP 547
            GIGL +  + V +  GSI ++S   +G+ F++ +P
Sbjct: 974  GIGLAVCRKIVDRHGGSIRVESEPGKGSTFTVTLP 1008



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 157 PSGEILGVVSVGYLLDNISSWLRVYSYPVIFTVLLLMLLSALGAWIFTRHIKQQMF---N 213
           P   I+G+    YL D     L + +  + F++L + + + L      RH   +     +
Sbjct: 294 PLWVIVGLSEDDYLADWRRQALIMVAVAMGFSLLSVTVATLLLRSWRNRHAAARALEAAH 353

Query: 214 MEPEEIAMNLNLQQSILQSVYEGIVAISLKGEILSVNAKALNILGIAHQPTHLIGRNVQE 273
           ++ EE    L L   IL S  EGI  +  +G I  +N  A  +LG +   T  +G N+ E
Sbjct: 354 VQTEEARHRLEL---ILASAGEGICGVDPEGRITFINPAARRMLGWSE--TEGVGLNLHE 408