Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 846 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 25/231 (10%)

Query: 339 LTSQLTQIRQHNDNLRVMSHEFANRLSTIGGLIQI-GAY----DEA---VKTIRRETAEQ 390
           L ++   +R+  + L ++SHEF   L+ I    Q+ G Y    D+A   V  IRR     
Sbjct: 607 LEAERQAMREQRNFLAMVSHEFRVPLAIIEAASQLLGIYLRANDDARDEVSKIRRAVRRM 666

Query: 391 QQLIDF-IAQTFHPKVIAGLLLGKYSRAKELG-LCLEFDPLSHLH----QEPQ---CMTS 441
            +LID  +A          L L +   A+ L  +C +  P +       Q PQ    M  
Sbjct: 667 SELIDVCLADDRLDSSAMRLQLDRVDVARMLSDICDDKRPFAGYRDLIIQAPQRAMAMVD 726

Query: 442 DELAAV-LGNLLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLF 500
             L  +   NL+DNA    LK   ++  +++L+T +   + + V D G GI+ D    +F
Sbjct: 727 PTLLRIAFSNLIDNA----LKFSPADSPVTILVTADSDAVRVRVCDQGPGIALDEQPRIF 782

Query: 501 LK---GVSSKNQEGHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFIPN 548
            K      S    G G+GLY+V + +     +I +DS    GTIF +++P+
Sbjct: 783 EKFYRSTKSDRVRGAGLGLYIVKRIMDLHGAAISVDSQGGAGTIFDVWLPD 833