Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1159 a.a., PAS domain S-box protein from Cellulophaga baltica 18

 Score = 62.8 bits (151), Expect = 7e-14
 Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 43/232 (18%)

Query: 357  SHEFANRLSTIGGLIQIGAYDEAVKTIRRETAEQQQLI----DFIAQTFHPKVIAGLLLG 412
            SHE    LS++ GLI I  +++  + +  +    QQ +    DFI             + 
Sbjct: 934  SHELRAPLSSVMGLIDIILHEDHDEALVFKLDMMQQSVKRLDDFIKD-----------IV 982

Query: 413  KYSRAKELGLCLEFDPLSHLHQEP----------------------QCMTSDE--LAAVL 448
            +YS+ K L + +E     HL  E                           SD+  ++ + 
Sbjct: 983  QYSQNKHLEIAMEPIDFRHLINESLESLWYLKNRKYINMEIDIKEIPLFYSDKKRISIIF 1042

Query: 449  GNLLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLF--LKGVSS 506
             NL+ NA +    N   N  I++ +     E+ I++ADNGIGI       +F     VSS
Sbjct: 1043 NNLISNAIKYHNINA-KNPRITITIASVNDEVSIQIADNGIGIPEKHLDKIFEMFYRVSS 1101

Query: 507  KNQEGHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFIPNRPKTLAAENL 558
            K   G GIGLY++ + VT+ +G+I + S    GT F I +PN+ K   A  +
Sbjct: 1102 KVM-GTGIGLYVIKEIVTKLNGTITVVSEPNVGTKFVILLPNQTKKSRANEV 1152