Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., putative transporter from Escherichia coli BL21

 Score =  311 bits (797), Expect = 3e-89
 Identities = 177/491 (36%), Positives = 277/491 (56%), Gaps = 46/491 (9%)

Query: 1   MQSFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNNKESSKG-ISS 59
           M  F  F+N ++W   +IYL  GAG +++  T FVQ R+  +  + L N+     G ++S
Sbjct: 1   MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS 60

Query: 60  FQALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKEED 119
           FQ+L  SL+ RVG+GN+AGVA AI  GGPGAVFWMW+ AF G AT++AE +LAQ+YKE D
Sbjct: 61  FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD 120

Query: 120 -NGEFRGGPAYYIEKAMGQKWYAWVFAIATIFACGVLLPGVQSNSIGNAVESAFGSGPMI 178
            NG+FRGGPA+Y+ + +G +W   +FA+  + A G++  G+Q+N++  A+  +F   P++
Sbjct: 121 ANGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGIQANAVARALSFSFDFPPLV 180

Query: 179 ETALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNI 238
                        TG ++++     I  G+  +A   Q  VP MA+ +++T+ VI ++NI
Sbjct: 181 -------------TGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNI 227

Query: 239 GEVPRIIAMIVGDAFSPMAGVGAAIGW--------GVKRGVYSNEAGQGTGPHAAAAAS- 289
           G++P +I  I   AF      G A G+        G +R ++SNEAG G+ P+AAAAA+ 
Sbjct: 228 GQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAAS 287

Query: 290 -VEHPAQQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASS 348
              HPA QG+VQ   I+IDTL++C+A+A +IL+ G    +   EG+ L+Q          
Sbjct: 288 WPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQK--------- 338

Query: 349 PAFTQIAVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVLK 408
                 A+   +   G  FV   +  FAF++I+A Y  AE N+ ++R        ++ L+
Sbjct: 339 ------AMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLR--LNNPKAIWCLR 390

Query: 409 LVLMASVFYGTVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDYEDQQKQ 468
           +   A+V  GT+ +  L W L D+   +MA + I  +  I  +S        DY  Q+K 
Sbjct: 391 ICTFATVIGGTLLSLPLMWQLADI---IMACMAITNLTAILLLSPVVHTIASDYLRQRKL 447

Query: 469 GVTEFTFNPVK 479
           GV    F+P++
Sbjct: 448 GVRP-VFDPLR 457