Pairwise Alignments

Query, 438 a.a., vibriobactin biosynthesis amide synthase VibH from Vibrio cholerae E7946 ATCC 55056

Subject, 3949 a.a., peptide synthase from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 82/383 (21%), Positives = 145/383 (37%), Gaps = 15/383 (3%)

Query: 6    AQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELY 65
            AQ+  W      P      +  +LRL G LD   L R+    ++  +  R     + +  
Sbjct: 1117 AQERQWFLWQLEPQSAAYHIPSALRLKGQLDLGALQRSFDTLLARHESLRTHLRQERDRT 1176

Query: 66   WHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTR 125
                SP +  Q     +    L  R +E ++ +   L   P+    + R++  EH++   
Sbjct: 1177 VQIISPQVSLQIAHAEVHEAQLKAR-VEAEIAQPFNLEQGPLLRVSLLRIAADEHVLVLV 1235

Query: 126  AHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKP--YQSYLEEEAAYLTSHRYWQDK 183
             HHIV DG+ M L  + L Q Y +   GQ       P  Y  Y   +  ++ +    +  
Sbjct: 1236 QHHIVSDGWSMQLMVEELVQLYAAYSQGQVLQWPALPIQYADYAVWQRNWMEAGEKARQL 1295

Query: 184  QFWQGYLREAPDLTLTSATYD-----PQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPD 238
             +W+  L    + ++ +  +D      Q      L++ L   L   L  LA    +    
Sbjct: 1296 AYWRDML--GGEQSVLALPFDHPRPAVQSHRGARLAFELPGALTQGLKALAKQQDVTLFM 1353

Query: 239  ALVALCALYLES-AEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYL 297
             L+A     L   +  +   + +P  NR  S    + G  VN+  L      Q S+   L
Sbjct: 1354 LLLASFQTLLHRYSGQEEIRVGVPIANRNRSETERLIGFFVNTQVLKADLHGQMSVEQLL 1413

Query: 298  KQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLA 357
            +Q+ Q       H     EQ+   + L  E+S   +P   ++          Q + + L 
Sbjct: 1414 QQARQRALDAQAHQDLPFEQLV--EALQPERSLSHNPLFQVMFNHQTDVGQAQVQ-QQLP 1470

Query: 358  SGSAEGINFTFRGSPQHELCLDI 380
            + S EG+ +  + +   +L LDI
Sbjct: 1471 NLSVEGLEWESK-TAHFDLDLDI 1492



 Score = 55.8 bits (133), Expect = 2e-11
 Identities = 77/321 (23%), Positives = 127/321 (39%), Gaps = 15/321 (4%)

Query: 28  SLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPL 87
           +LRL G LD   L RA    ++  +  R R    GE      +P    +      + + L
Sbjct: 77  ALRLQGRLDLAALQRAFDSLLARHESLRTRLVQDGERLLQNVAPEARIEIRQDVADEQQL 136

Query: 88  AWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHY 147
             R +E ++ R   L   P+    + +L+  EH++    HHI+ DG+ M +  + L Q Y
Sbjct: 137 LAR-VEAEIARPFDLQAGPLLRVSLLQLAEDEHVLVMVQHHIISDGWSMQVMVEELVQFY 195

Query: 148 QSLLSGQTPTAAFKP--YQSYLEEEAAYLTSHRYWQDKQFWQGYL-REAPDLTLTSATYD 204
            +   G+       P  Y  Y   + +++ +    +   +WQ  L  E P L L      
Sbjct: 196 AAHSQGREVQLPGLPIHYADYALWQRSWMEAGEKARQLAYWQDLLGGEQPVLELPLDHPR 255

Query: 205 P-QLSH-AVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCA----LYLESAEPDAPWL 258
           P Q SH   SL   L + L   + +L  A Q G    ++ L +    L+  S + D   +
Sbjct: 256 PAQQSHCGASLQVHLPADLVAGIKRL--AQQEGVTPFMLLLASFQTLLFRYSGQSDIR-I 312

Query: 259 WLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQI 318
            +P  NR       + G  VN+  L      Q S    L+Q+ +       H     EQ+
Sbjct: 313 GVPNANRNRVETERLIGFFVNTQVLKADLDGQMSFAELLQQAKRRSLEAQAHQDLPFEQL 372

Query: 319 EQDQGLNAEQSYFMSPFINIL 339
                L  E+S   +P   ++
Sbjct: 373 V--VALQPERSLSHNPLFQVM 391



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 97/432 (22%), Positives = 166/432 (38%), Gaps = 72/432 (16%)

Query: 35   LDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQ--- 91
            LD     +A    V   ++ R+ F  Q E     F  P+      + +    L W+    
Sbjct: 2670 LDVPRFRQAWQAAVDSHEILRSGFLWQTE-----FEQPLQVVYKQMRMPFAELDWQGRPD 2724

Query: 92   --------IEQDLQRSSTLIDAPITSHQVYRLSHSE-HLIYTRAHHIVLDGY-GMMLFEQ 141
                     E    +   L  AP+ S  V R   S  HLIYT  HHI++DG+ G  LF +
Sbjct: 2725 SSAALDSLAESARAQGFVLEQAPLLSLTVVRTGASRYHLIYTN-HHILMDGWSGSQLFGE 2783

Query: 142  RLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSA 201
             L QHY    +G+   A    Y+ Y+    A+L +      + FW+  L    + T  + 
Sbjct: 2784 VL-QHY----AGEPLRAPIGRYRDYI----AWLQAQDKSVSEAFWKAQLLNLQEPTRLAR 2834

Query: 202  TYDPQLSHAVSLS----YTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDAPW 257
                  S A++++      L++     L   A  +++     + +   L L+     A  
Sbjct: 2835 GLQAAQSEALAVNGEHRLNLDASQTAQLKAFAQRHKVTLNTLVQSAWLLLLQHHTGQA-- 2892

Query: 258  LWLPFMNRWGSVAANVP----------GLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSL 307
                    +G+  A  P          GL +N+LP++     Q ++  +L+Q       L
Sbjct: 2893 -----TVAFGATVAGRPAQLRGIEQQVGLFINTLPVVATPDAQMTVSQWLQQIQAQNVRL 2947

Query: 308  YLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINF- 366
                   + +I++  GL  E     + F +IL FE+   ++       L  G+  G+ F 
Sbjct: 2948 REQEHTPLFEIQRWAGLGGE-----ALFDSILVFENYPVSE------ALEQGAPSGLTFG 2996

Query: 367  TFRGSPQHELCLDITADLA-------SYPQSHWQ-SHCERFPRFFEQLLARFQQVEQDVA 418
                  Q    L +   +        +Y +  +  +H E+    F+QLL   Q +  D A
Sbjct: 2997 AVHSLEQTHYPLTVLLGIGDTLGMEFNYDRHAFSAAHIEQLAEHFQQLL---QALAVDGA 3053

Query: 419  RLLAEPAALAAT 430
            + LA   +LA+T
Sbjct: 3054 QRLATLPSLAST 3065



 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 14/203 (6%)

Query: 35   LDTTLLLRALHLTVSEIDLFRARFSAQGELYWHP-FSPPIDYQDLSIHLEAEPLAWRQIE 93
            L   LL+ AL   +   D  R  F  QG   W   +  P  +Q   +  +    A  ++E
Sbjct: 2203 LQAPLLVAALQALIVHHDALRIGF-VQGAAGWSAAYRGPQQHQAEQVLWQTTLNAVEELE 2261

Query: 94   ---QDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSL 150
               ++ QRS  L + P+    +  L+     +    HH+V+DG    +  + L   Y+ +
Sbjct: 2262 ALGEEAQRSLDLSEGPLLRAVLVDLADGSQRLLLVIHHLVVDGVSWRILLEDLQTAYRQV 2321

Query: 151  LSGQTPT--AAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLS 208
              G      A     +++ E   AY  S    Q+  +WQ  L+ +P   L  A  DPQ S
Sbjct: 2322 AQGAKVVLPAKTSAIRAWAERLQAYARSAALAQELAWWQTQLQGSP-TGLPGA--DPQAS 2378

Query: 209  ----HAVSLSYTLNSQLNHLLLK 227
                HA+S++  L+      LL+
Sbjct: 2379 LSNRHALSVTTHLDQVFTRRLLQ 2401