Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ribosome biogenesis GTPase Der from Magnetospirillum magneticum AMB-1

 Score =  303 bits (777), Expect = 6e-87
 Identities = 177/471 (37%), Positives = 269/471 (57%), Gaps = 18/471 (3%)

Query: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI-DGS 63
           VA++GRPNVGKSTLFNRL   R A+V D PG+TRDR+ G+A L   EF V+DT G  D  
Sbjct: 5   VAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFEDDG 64

Query: 64  EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123
            + +E +M  Q+  A+ EADV L ++D RAG+T  D   A HLRR+  P ILV NK +G 
Sbjct: 65  GDSIEARMRHQTDMAVAEADVALLLIDSRAGVTPLDRHFADHLRRLPTPVILVANKCEGK 124

Query: 124 DADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLEDLTNEEDPE 183
                  E + LGM +   ++A HG G+  L         E +     +   LT E D  
Sbjct: 125 AGAPGLYESYGLGMGEPVAVSAEHGEGMYELF--------EALRDHAIKAGALTPEGDDP 176

Query: 184 EEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDS 243
           E +     E+ E +  R    P+ +AI+GRPNVGKSTL N++LG++R++     G TRD+
Sbjct: 177 EPEEPAEGEDGEPDPTR----PLTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDA 232

Query: 244 IYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISD 303
           I +  +   R   L+DTAG+R++ +I + +EK SV  T++ I  + VV+LV+DA   +  
Sbjct: 233 IAVEWEHRGRRMKLVDTAGLRKKAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDK 292

Query: 304 QDLSLLGFALNSGRSIVIAVNKWDGLSFDVKEHVKKELDRRLGFVDFAR---IHFISALH 360
           QDL++    +  GR++V+A+NKWD +  D +  +K+  DR    +  AR      +SAL 
Sbjct: 293 QDLTIARLVVEEGRALVLAINKWDVVD-DPQTALKRLKDRLETSLPQARGVATVTLSALT 351

Query: 361 GTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPP-MVRGRRVKLKYAHAGGYN 419
           G G+  L ++V + +     R+ T+ L R ++   + H PP +  GRR K++Y       
Sbjct: 352 GRGIEKLMDAVLDTWTKWNRRIPTAQLNRWLEDMIERHPPPALPGGRRYKIRYMTQAKAR 411

Query: 420 PPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470
           PP  V+   +  +LP+SY RYL+N  R++ ++ G P+R+  +  +NP+  K
Sbjct: 412 PPTFVLFATRPEQLPESYSRYLVNGLREAFDLPGVPVRLYVRGGKNPYAEK 462



 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 204 LPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGV 263
           +P  +AIIGRPNVGKSTL NR++G+   +V+D+PG TRD           E+ ++DTAG 
Sbjct: 1   MPFTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGF 60

Query: 264 RRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAV 323
                  +++E     +T  A+ +A+V LL++D+R  ++  D             +++  
Sbjct: 61  EDDG--GDSIEARMRHQTDMAVAEADVALLLIDSRAGVTPLDRHFADHLRRLPTPVILVA 118

Query: 324 NKWDGLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQE 373
           NK +G      +     L    G +       +SA HG G+  LFE++++
Sbjct: 119 NKCEG------KAGAPGLYESYG-LGMGEPVAVSAEHGEGMYELFEALRD 161