Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., GTP-binding protein Era (NCBI) from Escherichia coli BW25113

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64
           +A+VGRPNVGKSTL N+L   + ++ +     TR R  G    G ++ I +DT G+   E
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 65  E-GVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123
           +  +   M + + ++I + ++V+F+V+G    T  DE +   LR  + P IL VNKVD +
Sbjct: 71  KRAINRLMNKAASSSIGDVELVIFVVEG-TRWTPDDEMVLNKLREGKAPVILAVNKVDNV 129

Query: 124 DADAASAEFWQLGMDQM 140
              A      Q    QM
Sbjct: 130 QEKADLLPHLQFLASQM 146



 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 15/177 (8%)

Query: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAG--VRR 265
           +AI+GRPNVGKSTL N++LG++  +      TTR  I         + + +DT G  +  
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70

Query: 266 RKRINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRS-IVIAVN 324
           ++ IN  + K        +I D  +V+ VV+      D ++ L    L  G++ +++AVN
Sbjct: 71  KRAINRLMNK----AASSSIGDVELVIFVVEGTRWTPDDEMVL--NKLREGKAPVILAVN 124

Query: 325 KWDGL--SFDVKEHVKKELDRRLGFVDFARIHFISALHGTGVGHLFESVQEAYRSAT 379
           K D +    D+  H+ + L  ++ F+D      ISA  G  V  +   V++    AT
Sbjct: 125 KVDNVQEKADLLPHL-QFLASQMNFLDIVP---ISAETGLNVDTIAAIVRKHLPEAT 177