Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., ribosome biogenesis GTPase Der from Bacteroides ovatus ATCC 8483

 Score =  285 bits (730), Expect = 2e-81
 Identities = 167/462 (36%), Positives = 264/462 (57%), Gaps = 40/462 (8%)

Query: 4   VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGG-IDG 62
           +VA+VGRPNVGKSTLFNRLT+TR A+V +  G TRDR+YG+++    EF V+DTGG +  
Sbjct: 4   LVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVN 63

Query: 63  SEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDG 122
           S++  E ++ +Q L A++EADV+LF+VD   G+T  D  +A  LRR   P I+V NK D 
Sbjct: 64  SDDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKTDN 123

Query: 123 IDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLEDLTNEEDP 182
            D    + EF++LG+   Y ++A  G G G L+D +++ F    + E +++ D       
Sbjct: 124 HDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVSNF----KKESSEILD------- 172

Query: 183 EEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRD 242
                               D+P + A++GRPN GKS++ N  +GEER +V ++ GTTRD
Sbjct: 173 -------------------DDIP-RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRD 212

Query: 243 SIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARENIS 302
           SIY    +   ++ L+DTAG+R++ ++NE +E +SVV+++++IE ++V +L++DA   + 
Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIEGSDVCILMLDATRGVE 272

Query: 303 DQDLSLLGFALNSGRSIVIAVNKWDGLSFDVKEHVKKELD-----RRLGFVDFARIHFIS 357
            QDL++      + + +V+ +NKWD L  D    V+K  +     R   FVDF  I F S
Sbjct: 273 GQDLNIFSLIQKNQKGLVVVINKWD-LVEDKSVKVQKAFEEAVRSRFAPFVDFP-IIFAS 330

Query: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKY-AHAG 416
           AL    +  + E  +  Y + TT++ T+ L   M    + + PP  +G+ +K+KY     
Sbjct: 331 ALTKQRILKVLEEARSVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLP 390

Query: 417 GYNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRI 458
               P  V   N    + + YKR+L N  R+   + GTP+ I
Sbjct: 391 NTQVPSFVYFANLPQYVKEPYKRFLENKMREKWNLTGTPVNI 432



 Score = 65.5 bits (158), Expect = 4e-15
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 3/126 (2%)

Query: 2   VPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI- 60
           +P  A+VGRPN GKS++ N        +V +  G TRD  Y +      +F ++DT GI 
Sbjct: 175 IPRFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIR 234

Query: 61  --DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVN 118
             +   E +E     +S+ +I+ +DV + M+D   G+   D  I   +++ +K  ++V+N
Sbjct: 235 KKNKVNEDLEYYSVVRSIRSIEGSDVCILMLDATRGVEGQDLNIFSLIQKNQKGLVVVIN 294

Query: 119 KVDGID 124
           K D ++
Sbjct: 295 KWDLVE 300